View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11594_low_4 (Length: 445)
Name: NF11594_low_4
Description: NF11594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11594_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 53042698 - 53042288
Alignment:
| Q |
20 |
tcacgatactgaacagcacgtcctcctagaactgcatccaactcaactgttttgatggctgcggcaccagcttcatcctattttatagttatgatcacca |
119 |
Q |
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| T |
53042698 |
tcacgatactgaacagcacgtcctcctagaactgcatccaactcaactgttttgatggctgcggcaccagcttcatcctattttatagttatgatcacca |
53042599 |
T |
|
| Q |
120 |
ttgagtaaatgggaaaattataacaaatagtgaactaaaaacaggcgaaaggggatgagaatatacgaacaataaaacttacctgactggtgtctttacc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
53042598 |
ttgagtaaatgggaaaattataacaaatagtgaactaaaaacaggcgaaaggggatgacaatatacgaacaataaaacttacctgactggtgtctttacc |
53042499 |
T |
|
| Q |
220 |
aagccaataatgaatatcatggcgcagagcaccactttttgatgccgttgtctacatgaagatgataaagnnnnnnnnnnnnnttaatactgattaaata |
319 |
Q |
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| T |
53042498 |
aagccaataatgaatatcatggcgcagagcaccactttttgatgccgttgtctacgtgaagatgataaagaaaaagaaaaaaattaatactgattaaata |
53042399 |
T |
|
| Q |
320 |
cattgttgcataatctattatgagggagtaccataaactcagaaaaattataaattactggattaacaacattatccacaaaaaccaaagaacaacaaat |
419 |
Q |
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| T |
53042398 |
cattgttgcataatctattatgagggagtaccataaactcagaaaaattataaattactggattaacaacattatccacaaaaaccaaagaacaacaaat |
53042299 |
T |
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| Q |
420 |
agtgtgaatct |
430 |
Q |
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| T |
53042298 |
agtgtgaatct |
53042288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 15965194 - 15965275
Alignment:
| Q |
23 |
cgatactgaacagcacgtcctcctagaactgcatccaactcaactgttttgatggctgcggcaccagcttcatcctatttta |
104 |
Q |
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| T |
15965194 |
cgatactgaacagcacgtcctccgagagctgcatccagctcaactgtcttgatggctgcagcaccagcttcatcctgtttta |
15965275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 198 - 274
Target Start/End: Original strand, 15965368 - 15965444
Alignment:
| Q |
198 |
ttacctgactggtgtctttaccaagccaataatgaatatcatggcgcagagcaccactttttgatgccgttgtctac |
274 |
Q |
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|||||||||||||||||||||||| ||| ||||| || ||||| |||||||||||||||||||| || ||||||||| |
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| T |
15965368 |
ttacctgactggtgtctttaccaatccagtaatggatgtcatgacgcagagcaccactttttgaggcagttgtctac |
15965444 |
T |
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