View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11594_low_5 (Length: 414)
Name: NF11594_low_5
Description: NF11594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11594_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 386
Target Start/End: Complemental strand, 48825896 - 48825531
Alignment:
| Q |
20 |
atcactctcaaaggtttacaagctattcatatataaatgcgacaaagtttacatggaagcttacacttccctcctctccttcggcctctcttcaaacggc |
119 |
Q |
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| T |
48825896 |
atcactctcaaaggtttacaagctattcata----aatgcgacaaagtttacatggaagcttacacttccctcctctccttcggcctctcttcaaaaggc |
48825801 |
T |
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| Q |
120 |
ctctccaacttagaaaaactatatggtaaacccattacacttgccgatagagaaatggttgaagaaaaagttgatgttattctatctcaa---------c |
210 |
Q |
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| T |
48825800 |
ctctccaacttagaaaaactatatggtaaacccattacacttgccgatagagaaatggttgaagaaaaagttgatgttattctatctcaagctcatcttt |
48825701 |
T |
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| Q |
211 |
ctcatgttgctttccttgttgttgtgtatgtatgtatgctatatcaccctccttcaacattttaattgttttgcttcagtttcttatttttg--tattct |
308 |
Q |
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| T |
48825700 |
ctcatgttgctttccttgttgttgtgtatgtatgtatgctatatcaccctcc--------tttaattgttttgcttcagtttcttatttctgtatattct |
48825609 |
T |
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| Q |
309 |
tcccagggctactactcacactgttcttgttgttcgagcaaagaaaatgggaattgaagtcaaaatagtgcacaatgc |
386 |
Q |
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| T |
48825608 |
tcccagggctactactcacactgttcttgttgttcgagcaaagaaaatgggaattgaagtcaaaatagtgcacaatgc |
48825531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 53054289 - 53054117
Alignment:
| Q |
26 |
ctcaaaggtttacaagctattcatatataaatgcgacaaagtttacatggaagcttacacttccctcctctccttcggcctctcttcaaacggcctctcc |
125 |
Q |
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| T |
53054289 |
ctcaaaggtttagaagctattcaaa----aatgcgacaaggtttacatggaagcttacacttcccttctctccttcggtctctcttcacacggcctctcc |
53054194 |
T |
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| Q |
126 |
aacttagaaaaactatatggtaaacccattacacttgccgatagagaaatggttgaagaaaaagttgatgttattct |
202 |
Q |
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||| | ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
53054193 |
aacctcgaaaaactatacggtaaacccattattcttgccgatagagaaatggttgaagaaaaagcggatgatattct |
53054117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 67 - 202
Target Start/End: Original strand, 53341292 - 53341427
Alignment:
| Q |
67 |
tttacatggaagcttacacttccctcctctccttcggcctctcttcaaacggcctctccaacttagaaaaactatatggtaaacccattacacttgccga |
166 |
Q |
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| T |
53341292 |
tttacatggaagcttacacttcccttccctccttcggtctctcttcatacggcctctccaaccttgaaaaactatacggtaaacccattacacttgccga |
53341391 |
T |
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| Q |
167 |
tagagaaatggttgaagaaaaagttgatgttattct |
202 |
Q |
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| T |
53341392 |
tagagaaatggttgaagaaaaagcggatgatattct |
53341427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 386
Target Start/End: Complemental strand, 53054015 - 53053895
Alignment:
| Q |
266 |
aacattttaattgttttgcttcagtttcttatttttgtattcttcccagggctactactcacactgttcttgttgttcgagcaaagaaaatgggaattga |
365 |
Q |
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|||| ||| ||||||||||||||||| | ||||| || || ||| ||||||||| |||||||||| |||||||||||||| ||||| |||||||| || |
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| T |
53054015 |
aacaattttattgttttgcttcagttattgattttggtgtttttcacagggctaccactcacactgaccttgttgttcgagctaagaagatgggaatcga |
53053916 |
T |
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| Q |
366 |
agtcaaaatagtgcacaatgc |
386 |
Q |
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| T |
53053915 |
agtcaaagttgtgcacaatgc |
53053895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 386
Target Start/End: Original strand, 53341596 - 53341660
Alignment:
| Q |
322 |
actcacactgttcttgttgttcgagcaaagaaaatgggaattgaagtcaaaatagtgcacaatgc |
386 |
Q |
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|||||||||| |||||||||||||| ||||| |||||||| ||||||||| | ||||||||||| |
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| T |
53341596 |
actcacactgaccttgttgttcgagctaagaagatgggaatcgaagtcaaagttgtgcacaatgc |
53341660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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