View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11594_low_7 (Length: 403)
Name: NF11594_low_7
Description: NF11594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11594_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 29 - 386
Target Start/End: Original strand, 37187889 - 37188246
Alignment:
| Q |
29 |
tatactatactataatcaaagattgacttgcaaactttgttaaaagggagaatatgttattgtttaaagataatattgagaagaataatacaaaaccctc |
128 |
Q |
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| T |
37187889 |
tatactatactatattcaaagtttgacttgcaaactttgttaacggggagaatatgttattgtttaaagataatattgagaagaataatacaaaaccctc |
37187988 |
T |
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| Q |
129 |
accaaagaacagttggaaattaaatccttaactttgcacaaacttaatcaatattacatgcatgtggagaaagaacgtgactaaacaatgcctagcaaat |
228 |
Q |
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| T |
37187989 |
accaaagaacagttggaaattaaatcctcaactttgcacaaacttaatcaatattacatgcatgtggggaaagaacgttactcaacaatgcctagcaaat |
37188088 |
T |
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| Q |
229 |
aagtaaggtattctttagagacatattttgttacagggaaacccaatttgagattttccttgacataaatcaatccttacacgaaaaggaagaactaaat |
328 |
Q |
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| T |
37188089 |
aagtaaggtattctttagagacatattttgttacagggaaacccaatttgagattttccttgacataaatcaatccttacacgaaaaggaagaactaaat |
37188188 |
T |
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| Q |
329 |
tggaagaaaatacaacccatcaatgtgtatatatacgtaacataaccccatatttcat |
386 |
Q |
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| T |
37188189 |
tggaagaaaatacaacccatcaatgtgtatatatacgtaacataaccccatatttcat |
37188246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 34 - 386
Target Start/End: Original strand, 37892783 - 37893143
Alignment:
| Q |
34 |
tatactataatcaaagattgacttgcaaactttgttaaaagggagaatat-gttattgtttaaagataatattgagaagaataatacaaaaccctcacca |
132 |
Q |
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| T |
37892783 |
tatactatattcaaaggttgacttgcaaactttgttaacagggagaatattgttattgtttaaagataatattgagaagaataatacaaaaccctcacca |
37892882 |
T |
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| Q |
133 |
aagaacagtt-------ggaaattaaatccttaactttgcacaaacttaatcaatattacatgcatgtggagaaagaacgtgactaaacaatgcctagca |
225 |
Q |
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| T |
37892883 |
aagaacagttggaagttggaaattaaatccttaactttgcacaaacttaatcaatattacatgcatgtggagaaagaacgtgactaaacaatgcctagca |
37892982 |
T |
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| Q |
226 |
aataagtaaggtattctttagagacatattttgttacagggaaacccaatttgagattttccttgacataaatcaatccttacacgaaaaggaagaacta |
325 |
Q |
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| T |
37892983 |
aataagtaaggtattctttagagacatattttgttacagggaaacccaatttgagattttccttgacataaatcaatccttacacgaaaaggaagaacta |
37893082 |
T |
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| Q |
326 |
aattggaagaaaatacaacccatcaatgtgtatatatacgtaacataaccccatatttcat |
386 |
Q |
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| T |
37893083 |
aattggaagaaaatataacccatcaatgtgtatatatacgtaacataaccccatatttcat |
37893143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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