View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11594_low_8 (Length: 403)
Name: NF11594_low_8
Description: NF11594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11594_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 36677113 - 36677511
Alignment:
| Q |
1 |
ttcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctt-aaaagcacccaaaatctaagattccttatacaatttact |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36677113 |
ttcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctttaaaagcacccaaaatctaagattccttatacaatttact |
36677212 |
T |
|
| Q |
100 |
taaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataataattgtaaaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36677213 |
taaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataataattgtaaaat |
36677312 |
T |
|
| Q |
200 |
aataggatcataaacgacttgtttagcattgatagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactagagaaagagggaattca |
299 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36677313 |
cataggatcataaacgacttgtttagcattgacagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactagagaaagagggagttcg |
36677412 |
T |
|
| Q |
300 |
gaaatgtcatatgttggaggagtttgatgtccatatcgtagtagattttgtgcttgatgaacataatcatactttgcaattgttctgattcttctcact |
398 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36677413 |
gaaatgtcatatgttggaggagtttgatgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgcaattgttctgattcttgtcact |
36677511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 36687195 - 36687593
Alignment:
| Q |
1 |
ttcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctt-aaaagcacccaaaatctaagattccttatacaatttact |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36687195 |
ttcatttgaattttccattacattacatcatttgcgaatcgtaacttgaaatatcatctttaaaagcacccaaaatctaagattccttatacaatttact |
36687294 |
T |
|
| Q |
100 |
taaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataataattgtaaaat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36687295 |
taaacataataacaactaactgggtgcacgggttaacaagaccgatattattaatagatagatagtagatatatttgaagcacaataataattgtaaaat |
36687394 |
T |
|
| Q |
200 |
aataggatcataaacgacttgtttagcattgatagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactagagaaagagggaattca |
299 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36687395 |
cataggatcataaacgacttgtttagcattgacagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactagagaaagagggagttcg |
36687494 |
T |
|
| Q |
300 |
gaaatgtcatatgttggaggagtttgatgtccatatcgtagtagattttgtgcttgatgaacataatcatactttgcaattgttctgattcttctcact |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
36687495 |
gaaatgtcatatgttggaggagtttgatgtccatagtgtagtagattttgtgcttgatgaacataatcatactttgcaattgttctgattcttgtcact |
36687593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 36665427 - 36665304
Alignment:
| Q |
1 |
ttcatttgaattttccattacattacat--cat--ttgcgaatcgtaacttgaaatatcatcttaa-aagcacccaaaatctaagattccttatacaatt |
95 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||| ||||| | |||||| |||||||||||||||| ||||||||| |
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|
| T |
36665427 |
ttcatttgaattttccattacattacattacatcattgtgaatcgtgacttgaaatatgatctttagaagcactcaaaatctaagattccatatacaatt |
36665328 |
T |
|
| Q |
96 |
tacttaaacataataacaactaac |
119 |
Q |
| |
|
||||||||||||||||| |||||| |
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|
| T |
36665327 |
tacttaaacataataaccactaac |
36665304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 201 - 283
Target Start/End: Complemental strand, 36664931 - 36664849
Alignment:
| Q |
201 |
ataggatcataaacgacttgtttagcattgatagccgcaatgaaatctacatgtgcataattatccttcaacaacaccactag |
283 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| |
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|
| T |
36664931 |
ataggatcataaatgagttgtttagcattgatagccgcaatgaaatctaaatgtgcataattatcgttcaacgacaccactag |
36664849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 375
Target Start/End: Complemental strand, 36664728 - 36664658
Alignment:
| Q |
305 |
gtcatatgttggaggagtttgatgtccatatcgtagtagattttgtgcttgatgaacataatcatactttg |
375 |
Q |
| |
|
|||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36664728 |
gtcataagttggaggagttcgatgtccatagtgtagtagattttgtgcttgatgaacataatcatactttg |
36664658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 280
Target Start/End: Original strand, 36704362 - 36704438
Alignment:
| Q |
204 |
ggatcataaacgacttgtttagcattgatagccgcaatgaaatctacatgtgcataattatccttcaacaacaccac |
280 |
Q |
| |
|
||||||||||||||||||||||||||| | |||| || ||||| |||||||||||| |||||| ||||| ||||| |
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|
| T |
36704362 |
ggatcataaacgacttgtttagcattgtcacccgctataaaatcagcatgtgcataatcatccttgaacaataccac |
36704438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 36665022 - 36664986
Alignment:
| Q |
163 |
agtagatatatttgaagcacaataataattgtaaaat |
199 |
Q |
| |
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|||||||||||| |||||||||||||| ||||||||| |
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|
| T |
36665022 |
agtagatatattcgaagcacaataatagttgtaaaat |
36664986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 30905564 - 30905532
Alignment:
| Q |
344 |
attttgtgcttgatgaacataatcatactttgc |
376 |
Q |
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|||||||||||||| |||||||||||||||||| |
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|
| T |
30905564 |
attttgtgcttgatcaacataatcatactttgc |
30905532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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