View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11595_high_1 (Length: 787)
Name: NF11595_high_1
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 260 - 769
Target Start/End: Complemental strand, 49982617 - 49982108
Alignment:
| Q |
260 |
tacctgagatccgataatgactgcgcctttttccaaaaagagggtaagatggctagtgagattgaaactttgagtaagccatgttccagggggtacatat |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49982617 |
tacctgagatccgataatgactgcgcctttttccaaaaagagggtaagatggctagtgagattgaaactttgagtaagccatgttccagggggtacatat |
49982518 |
T |
|
| Q |
360 |
agctgagcaccacctttatcagcaaatgacttgagatagaagatggcattctgaaatgcaatggtgttcaatgttttaccatcaccaactgcaccaaact |
459 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49982517 |
agctgagcaccacctttatcagcaaacgacttgagatagaagatggcattctgaaatgcaatggtgttcaatgttttaccatcaccaactgcaccaaact |
49982418 |
T |
|
| Q |
460 |
ccaaaatggagacactatgtggtcttggcttaagtgatggattgaacccacattgcctatcacctctttcaccattcactctcacttcattgctcaatgc |
559 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49982417 |
ccaaaatggagacactatgtggtcttggcttaagtgatggattgaacccacattgcctatcacctctttcaccattcactctcacttcattgctcaatgc |
49982318 |
T |
|
| Q |
560 |
cagcagcagcaagaccaatgccacctaaaagtaaatttaagaacacgattaaacaattgaattatccttatcacctcatgagatatctatcttatacaac |
659 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
49982317 |
cagcagcagcaagaccaatgccacctaaaagtaaatttaagaacacaattaaacaattgaattatccttatcacctcatgagatatctttcttatacagc |
49982218 |
T |
|
| Q |
660 |
agttcaaaatcaaatagttcatagagacaagggaattatttctttcatttgttaaaaataattcatttcaattgaattcataagccaacaattaatatag |
759 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49982217 |
agttcaaaatcaaatagttcatagagacaagggaattatttctttcatttgttaaaaataattcatttcaattgaattcataagccaacaattaatatag |
49982118 |
T |
|
| Q |
760 |
cagaaattaa |
769 |
Q |
| |
|
|||||||||| |
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|
| T |
49982117 |
cagaaattaa |
49982108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 49982872 - 49982647
Alignment:
| Q |
1 |
caagacactgacacatcgaaaccagtaataatttgagaaaatggtataattgaattgaatgaaaccacatatgtcagtgtcaaacaccgaacacgccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49982872 |
caagacactgacacatcgaaaccagtaataatttgagaaaatggtataattgaattgaatgaaaccacatatgtcagtgtcaaacaccgaacacgccttc |
49982773 |
T |
|
| Q |
101 |
aatctgaaatctgaagtttccgtgctacacacgtaactaacccgtagattgaaacatgtatgttatatgtactagctagtactatatcactatctctata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
49982772 |
aatctgaaatctgaagtttccgtgctacacacataactaacccatagattgaaacatgtatgttatatgta----ctagtactatatcactatctctata |
49982677 |
T |
|
| Q |
201 |
tacataaaagacaataatcgaaaggcagtg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
49982676 |
tacataaaagacaataatcgaaaggcagtg |
49982647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 6e-64; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 260 - 484
Target Start/End: Original strand, 13609315 - 13609539
Alignment:
| Q |
260 |
tacctgagatccgataatgactgcgcctttttccaaaaagagggtaagatggctagtgagattgaaactttgagtaagccatgttccagggggtacatat |
359 |
Q |
| |
|
|||||||||||| |||||||| || |||||||||||||||||||| |||||||| || ||||||||||| ||||||||| |||| || || ||||| |
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|
| T |
13609315 |
tacctgagatccaataatgacagcacctttttccaaaaagagggtgagatggctggtaagattgaaactaccagtaagccagtttcctggtggcacatag |
13609414 |
T |
|
| Q |
360 |
agctgagcaccacctttatcagcaaatgacttgagatagaagatggcattctgaaatgcaatggtgttcaatgttttaccatcaccaactgcaccaaact |
459 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| || |||| |||||||||||| |||||||||||||| | |
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|
| T |
13609415 |
agctgagcaccacccttatcagcaaatgacttgagatagaaaattgcattctgaaatgcaattgtattcagtgttttaccatctccaactgcaccaaatt |
13609514 |
T |
|
| Q |
460 |
ccaaaatggagacactatgtggtct |
484 |
Q |
| |
|
||||||| |||||||| |||||||| |
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|
| T |
13609515 |
ccaaaatagagacactgtgtggtct |
13609539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 390 - 473
Target Start/End: Complemental strand, 17763601 - 17763518
Alignment:
| Q |
390 |
ttgagatagaagatggcattctgaaatgcaatggtgttcaatgttttaccatcaccaactgcaccaaactccaaaatggagaca |
473 |
Q |
| |
|
||||||||||| | | |||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| |
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| T |
17763601 |
ttgagatagaaaactgtattctggaatgcaatggtattcaatgttttaccatctccaacagcaccaaactccaaaatagagaca |
17763518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 6736474 - 6736527
Alignment:
| Q |
2 |
aagacactgacacatcgaaaccagtaataatttgagaaaatggtataattgaat |
55 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
6736474 |
aagacactgacacgtcgacaccggtaataatttgagaatatggaataattgaat |
6736527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 12464923 - 12464850
Alignment:
| Q |
3 |
agacactgacacatcgaaaccagtaataatttgagaaaatggtataattgaattgaatgaaaccacatatgtca |
76 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||||||| || ||||||||||||| || ||||| ||||| |
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|
| T |
12464923 |
agacactgacacgccgacaccaataataatttgagaaaatgacatgattgaattgaatgcaatcacatgtgtca |
12464850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 33498619 - 33498665
Alignment:
| Q |
9 |
tgacacatcgaaaccagtaataatttgagaaaatggtataattgaat |
55 |
Q |
| |
|
|||||| |||| || ||||||||||||||||||||| |||||||||| |
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|
| T |
33498619 |
tgacacgtcgacacaagtaataatttgagaaaatggaataattgaat |
33498665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 11815815 - 11815866
Alignment:
| Q |
4 |
gacactgacacatcgaaaccagtaataatttgagaaaatggtataattgaat |
55 |
Q |
| |
|
||||||||||| | || |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
11815815 |
gacactgacacgttgacaccaataataatttgagaaaatgttataattgaat |
11815866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 32850097 - 32850047
Alignment:
| Q |
5 |
acactgacacatcgaaaccagtaataatttgagaaaatggtataattgaat |
55 |
Q |
| |
|
||||||||| | ||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
32850097 |
acactgacataccgacaacagtaataatttgagaaaattgtataattgaat |
32850047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 41279577 - 41279615
Alignment:
| Q |
4 |
gacactgacacatcgaaaccagtaataatttgagaaaat |
42 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
41279577 |
gacactgacacatcgagactagtaataatttgagaaaat |
41279615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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