View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11595_high_11 (Length: 421)
Name: NF11595_high_11
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 4663520 - 4663119
Alignment:
| Q |
1 |
catcaaatggacgaggagtaggatttgaaataactttttcagggaaaccaaataaatgtgaaggagatgaggattaggatgatattgaacttcatggtgt |
100 |
Q |
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| T |
4663520 |
catcaaatggacgaggagtaggatttgaaataactttttcagggaaaccaaat----gtgaaggagatgaggattaggatgatattgaacttcatggtgt |
4663425 |
T |
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| Q |
101 |
ttcaatgaagatgaactttggtgaacaagagatgtaaaaagttacagggactagtttgtgcaaggcctaacactcaatttatgcggtttcccttaaaaaa |
200 |
Q |
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| T |
4663424 |
ttcaatgaagatgaactttggtgaacaagagatgtaaaaagttacagggactagtttgtgcaaggcctaacactcaatttatgcggtttcccttaaaaaa |
4663325 |
T |
|
| Q |
201 |
ctcaatttatgcggttaagctttcaatatgctgtgcccttagatattgattttatatatgaagtgattcacattttcgctcactaccaaaaaatattgaa |
300 |
Q |
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| T |
4663324 |
ctcaatttatgcggttaagctttcaatatgctgtgcccttagatattgattttatatatgaagtgattcacattttcgctcactaccaaaaaatattgaa |
4663225 |
T |
|
| Q |
301 |
gcgtaccaaacaaaacggtttctcaacattactattttattgaannnnnnnacaattaacataggagtggtgtggggtccatctaataaacccctagtca |
400 |
Q |
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| T |
4663224 |
gcgt-ccaaacaaaacggtttctcaacattactattttattgaatttttttacaattaacataggaatggtgtggtgtccatctaataaacccctggtca |
4663126 |
T |
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| Q |
401 |
ttcatct |
407 |
Q |
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| T |
4663125 |
ttcatct |
4663119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 4666937 - 4666759
Alignment:
| Q |
5 |
aaatggacgaggagtaggatttgaaataactttttcagggaaaccaaataaatgtgaaggagatgaggattaggatgatattgaacttcatggtgtttca |
104 |
Q |
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| T |
4666937 |
aaatggacgaggagtaggatttgaaataactttttcatggaaacaaaata----tgaaggaaatgaggattaggatgatattgaacttcatactgtttta |
4666842 |
T |
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| Q |
105 |
atgaagatgaactttggtgaacaagagatgtaaaaagttacagggac---tagtttgtgcaaggcctaacactcaatttatgc |
184 |
Q |
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| T |
4666841 |
gtgaagatgaacttttgtgaacaagagatgtatgaagttatagggactagtagtttgtgcaaggcctaacactcaatttatgc |
4666759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 200 - 343
Target Start/End: Complemental strand, 4666771 - 4666625
Alignment:
| Q |
200 |
actcaatttatgcggttaagctttcaatatg-ctgtgcccttagatattgattttatatatgaagtgattcacattttcgct-cactaccaaaaaata-t |
296 |
Q |
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||||||||||||| || || |||| |||||| | |||||||||||||||| |||||| |||||||||||||||||||||||| |||| | || | | |
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| T |
4666771 |
actcaatttatgctgtcaaacttttaatatggcggtgcccttagatattggttttatttatgaagtgattcacattttcgctccactccttaattgcact |
4666672 |
T |
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| Q |
297 |
tgaagcgtaccaaacaaaacggtttctcaacattactattttattga |
343 |
Q |
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| T |
4666671 |
tgaagcgtaccaaataaaaaggtttctcaacattactattttattga |
4666625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 368 - 407
Target Start/End: Complemental strand, 4666595 - 4666556
Alignment:
| Q |
368 |
tggtgtggggtccatctaataaacccctagtcattcatct |
407 |
Q |
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| T |
4666595 |
tggtgtggggtccatctaataaacccttggtcattcatct |
4666556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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