View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11595_high_16 (Length: 333)
Name: NF11595_high_16
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 48592515 - 48592199
Alignment:
| Q |
1 |
aatactcaacatcatccgtgatattatgttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttccaccttagacttatttgccaaagtt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48592515 |
aatactcaacatcatccgtgatattatgttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttctgccttagacttatttgccaaagtt |
48592416 |
T |
|
| Q |
101 |
tgaatgaattcatggagttcttgggttcgaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592415 |
tgaatgaattcatggagttcttgggttcgaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttcc |
48592316 |
T |
|
| Q |
201 |
aataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48592315 |
aataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgt |
48592216 |
T |
|
| Q |
301 |
cttgagaaactctttgg |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
48592215 |
cttgagaaactctttgg |
48592199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 48602210 - 48601894
Alignment:
| Q |
1 |
aatactcaacatcatccgtgatattatgttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttccaccttagacttatttgccaaagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
48602210 |
aatactcaacatcatccgtgatattatgttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttctgccttagacttatttgccaaagtt |
48602111 |
T |
|
| Q |
101 |
tgaatgaattcatggagttcttgggttcgaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48602110 |
tgaatgaattcatggagttcttgggttcgaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttcc |
48602011 |
T |
|
| Q |
201 |
aataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48602010 |
aataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgt |
48601911 |
T |
|
| Q |
301 |
cttgagaaactctttgg |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
48601910 |
cttgagaaactctttgg |
48601894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 23231817 - 23232133
Alignment:
| Q |
1 |
aatactcaacatcatccgtgatattatgttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttccaccttagacttatttgccaaagtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||| ||| ||| |
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|
| T |
23231817 |
aatactcaacatcatccgtgatattatgttgttggaaagctttatcaaagcttgtgtgaggttcaaactttctctggccttagatttatttgtcaatgtt |
23231916 |
T |
|
| Q |
101 |
tgaatgaattcatggagttcttgggttcgaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttcc |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23231917 |
tgaatgaattcatcgagttcttgggttcgaatcggtaggaattgcccaatggttcggttacccaagagctcagtggtgctgagctttttaataaatttcc |
23232016 |
T |
|
| Q |
201 |
aataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23232017 |
aataagtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgt |
23232116 |
T |
|
| Q |
301 |
cttgagaaactctttgg |
317 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
23232117 |
cttgagaaactctttgg |
23232133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 5 - 315
Target Start/End: Original strand, 23224488 - 23224798
Alignment:
| Q |
5 |
ctcaacatcatccgtgatattatgttgttggaaagctttatcaaagcttgtgtgaggttcacactttcttccaccttagacttatttgccaaagtttgaa |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||| ||||| || |||||| |||||||||||| |
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| T |
23224488 |
ctcaacatcatccgtgatattatgttgttggaaagcttcaacaaagcttgagtgaggttcacgctttcttcaaccttggatttattttccaaagtttgaa |
23224587 |
T |
|
| Q |
105 |
tgaattcatggagttcttgggttcgaatcggtagaaattgtgccatggttcgattacccaagagctcagtggtgctgagctttttaataaatttccaata |
204 |
Q |
| |
|
|||| || | ||||||| | |||||||| |||| |||||| | || || || || || ||||||||| ||| || |||||||| || ||||||||||| |
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|
| T |
23224588 |
tgaactcgttgagttctcgagttcgaattggtaagaattgtccaatagtccggttgcctaagagctcaaaggtactaagctttttgatgaatttccaata |
23224687 |
T |
|
| Q |
205 |
agtcccataaggagcgaaagcaaaagttgcatcatcataggcaactacgttgatggctatgctcattttacggtgagaataagtgagctcatgtgtcttg |
304 |
Q |
| |
|
| ||||||||| || ||||||||||| |||||||| ||| ||||| ||||||||| ||| ||||||||||| ||||||| ||||| | ||| ||| |
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| T |
23224688 |
tgccccataaggggcaaaagcaaaagtagcatcatcgtagacaactgtgttgatggcaatgttcattttacgggaagaataaacaagctcgtttgttttg |
23224787 |
T |
|
| Q |
305 |
agaaactcttt |
315 |
Q |
| |
|
||||||||||| |
|
|
| T |
23224788 |
agaaactcttt |
23224798 |
T |
|
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