View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11595_high_17 (Length: 322)
Name: NF11595_high_17
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 39526532 - 39526843
Alignment:
| Q |
1 |
tataacaagtgctgttctcgggtttctgcttcgatttttctgaacaagtttatcagagtcttctttgatgttagataaaaagcaaatttggataatcatt |
100 |
Q |
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| T |
39526532 |
tataacaagtgctgttctcgggtttctgcatcgatttttctgaacaagtttatcagagtgttcgttgatgttagataaaaagcaaatttggataatcatt |
39526631 |
T |
|
| Q |
101 |
cggaatttgaatctgatgatgtcgattgtaaggttagcgggtaccttctccccaagcatgtgtttctcttgctttcaatttgttgggctatgtcatggga |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39526632 |
cggaatttgaatctgatgatgtcgattgcaaggttagcgggtatcttctccccaagcatgtgtttctcttgctttcaatttgttgggctatgtcatagga |
39526731 |
T |
|
| Q |
201 |
ttgtagaaatttgaaagggaaagggaatttgagtgtaccggatttgactcatttggttttgtcggcgattacgttgtgtgttcatgataaagatgaaggt |
300 |
Q |
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| T |
39526732 |
ttgtagaaatttgaaagggaaagggaatttgagtgtaccggatttgactcatttggttttgtcggcgattacgttgtgtgttcatgataaagatgaaggt |
39526831 |
T |
|
| Q |
301 |
gggtttgatgtc |
312 |
Q |
| |
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|||||||||||| |
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| T |
39526832 |
gggtttgatgtc |
39526843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 43699124 - 43698858
Alignment:
| Q |
1 |
tataacaagtgctgttctcgggtttctgcttcgatttttctgaacaagtttatcagagtcttctttgatgttagataaaaagcaaatttggataatcatt |
100 |
Q |
| |
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||||||||||| ||||| |||||||||| |||||||||||||||||||| || ||||| ||| ||||||||| ||||||| ||||||||| ||||| |
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| T |
43699124 |
tataacaagtgttgttcaagggtttctgcatcgatttttctgaacaagttcattagagtattcgttgatgttactaaaaaagcgaatttggatgttcatt |
43699025 |
T |
|
| Q |
101 |
cggaatttgaatctgatgatgtcgattgtaaggttagcgggtaccttctccccaagcatgtgtttctcttgctttcaatttgttgggctatgtcatggga |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43699024 |
tggaatttgaatctgatgatgttgattgtaaggttagcgggtaccttctccccaagcatgtgtttctcttgctttcaatttgttgggctatgtcgtggga |
43698925 |
T |
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| Q |
201 |
ttgtagaaatttgaaagggaaagggaatttgagtgtaccggatttgactcatttggttttgtcggcg |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
43698924 |
ttgtagaaatttgaaagggaaagggaatttgagtgtaccggatttgagtcatttggttacgtcggcg |
43698858 |
T |
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