View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11595_low_10 (Length: 438)
Name: NF11595_low_10
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_low_10 |
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| [»] scaffold0068 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 32094644 - 32095048
Alignment:
| Q |
18 |
accttcatctttaaactcaacaaatattgcactcattccgaagggagactctcaaacatcaatgaaagataggaggccaatatacttgtgcaacgtaatt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32094644 |
accttcatctttaaactcaacaaatattgcactcattccgaagggagactctcaaacatcaatgaaagattggaggccaatatacttgtgcaacgtaatt |
32094743 |
T |
|
| Q |
118 |
tacaaaattttatctaaggtacttgcaaatagactgaaagtggtgttggataaatgtatatcagatacacagtctgcgtttgtgccgggacgttctatct |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32094744 |
tacaaaattttagctaaggtacttgcaaatagactgaaagtggtgttgaataaatgtatatcagatacacagtctgcgtttgtaccgggacgttctatct |
32094843 |
T |
|
| Q |
218 |
tggatgatgcaatataatgacaccaatagaaattatccatcatatgaagtctaaggttaaaggaaaattgggagaagtggctcttaaacttgatatcagt |
317 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
32094844 |
tggataatgc-----aatgacaccaatagaaattatccatcatatgaagtctaaggttaaaggaaaattgagagaagtggctcttaaactttatatcagt |
32094938 |
T |
|
| Q |
318 |
aaagcttacgaaagaattgagtggaactaccttcgagaaatcatggaaaaatgggattttctccacaatggattatgttatgtgtcgaaactgtcgacta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32094939 |
aaagcttacgaaagaattgagtggaactaccttcgagaaatcatggaaaaatgggattttctccacaatggattatgttatgtgtcgaaactgtcgacta |
32095038 |
T |
|
| Q |
418 |
ttctgttctt |
427 |
Q |
| |
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|||||||||| |
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| T |
32095039 |
ttctgttctt |
32095048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 286 - 427
Target Start/End: Complemental strand, 46390184 - 46390042
Alignment:
| Q |
286 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
384 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||||| | ||||| |||||||| ||||||| ||| |
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| T |
46390184 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgagaggttatggataaaatgggcttttctcaaca |
46390085 |
T |
|
| Q |
385 |
atggattatgttatgtgtcgaaactgtcgactattctgttctt |
427 |
Q |
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|||||| ||| | |||||||||||||||||||||||| ||||| |
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| T |
46390084 |
atggataatggtgtgtgtcgaaactgtcgactattctattctt |
46390042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 390
Target Start/End: Original strand, 48211263 - 48211368
Alignment:
| Q |
286 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
384 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||| | | ||||| |||||||| |||||| ||| |
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| T |
48211263 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgacaggttatggataaaatgggcttttctgaaca |
48211362 |
T |
|
| Q |
385 |
atggat |
390 |
Q |
| |
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|||||| |
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|
| T |
48211363 |
atggat |
48211368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Complemental strand, 381604 - 381556
Alignment:
| Q |
118 |
tacaaaattttatctaaggtacttgcaaatagactgaaagtggtgttgg |
166 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||| |||| |
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| T |
381604 |
tacaaaattctagctaaggtacttgcaaatagactgaaagtggtcttgg |
381556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 390
Target Start/End: Original strand, 21702104 - 21702209
Alignment:
| Q |
286 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
384 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||| | | ||||| |||||||| |||||| ||| |
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| T |
21702104 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgacaggttatggataaaatgggcttttctgaaca |
21702203 |
T |
|
| Q |
385 |
atggat |
390 |
Q |
| |
|
|||||| |
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|
| T |
21702204 |
atggat |
21702209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 33307565 - 33307509
Alignment:
| Q |
31 |
aactcaacaaatattgcactcattccgaagggagactctcaaacatcaatgaaagat |
87 |
Q |
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||||||||||||||||| || ||||| || ||||| |||||| |||| ||||||||| |
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| T |
33307565 |
aactcaacaaatattgctctaattcctaaaggagagtctcaagcatccatgaaagat |
33307509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 390
Target Start/End: Complemental strand, 11806 - 11701
Alignment:
| Q |
286 |
tgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtggaactaccttcgagaaatcatgga-aaaatgggattttctccaca |
384 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| || || || || ||||| || |||||| | | ||||| |||||||| |||||| ||| |
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| T |
11806 |
tgggagaagtggctcttaagcttgatattagtaaagcttatgacaggatcgaatggaattatcttcgacaggttatggataaaatgggcttttctgaaca |
11707 |
T |
|
| Q |
385 |
atggat |
390 |
Q |
| |
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|||||| |
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| T |
11706 |
atggat |
11701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 352
Target Start/End: Complemental strand, 23266702 - 23266593
Alignment:
| Q |
243 |
atagaaattatccatcatatgaagtctaaggttaaaggaaaattgggagaagtggctcttaaacttgatatcagtaaagcttacgaaagaattgagtgga |
342 |
Q |
| |
|
|||||||| || |||||||||||||| || || || | || | |||||||||||||| ||||||||||| || ||||| || || | ||||||||||| |
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| T |
23266702 |
atagaaataatacatcatatgaagtcgaaagtcaaggataacgttggagaagtggctctgaaacttgatattagcaaagcatatgacaaaattgagtgga |
23266603 |
T |
|
| Q |
343 |
actaccttcg |
352 |
Q |
| |
|
|||| ||||| |
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|
| T |
23266602 |
actatcttcg |
23266593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 35319879 - 35319935
Alignment:
| Q |
31 |
aactcaacaaatattgcactcattccgaagggagactctcaaacatcaatgaaagat |
87 |
Q |
| |
|
||||||||||||||||| || ||||| || ||||| |||||| |||| ||||||||| |
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|
| T |
35319879 |
aactcaacaaatattgctctaattcctaaaggagagtctcaagcatccatgaaagat |
35319935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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