View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11595_low_13 (Length: 396)
Name: NF11595_low_13
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 28 - 390
Target Start/End: Original strand, 45874098 - 45874460
Alignment:
| Q |
28 |
ttcaatttttgttcctctcattagttaacttttagcttctcaatcccgatcaagataatataacaagtgattgaaagtaacatgaaaattacaaaaggag |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45874098 |
ttcaatttttgttcctctcattagttaacttttagcttctcaatccagatcaagataatataacaagtgattgaaagtaacatgaaaattacaaaaggag |
45874197 |
T |
|
| Q |
128 |
gaggaaatatacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaataattcaac |
227 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45874198 |
gaggaaatttacctggccagtatttccattgataaacacattgctgcaattgagatctctatgaatgatacatggatcatgaacatgcaaataattcaac |
45874297 |
T |
|
| Q |
228 |
ccttccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcag |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45874298 |
ccttccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcag |
45874397 |
T |
|
| Q |
328 |
tgatgaaattaagtatgttatgatcttcatctctccaaacatagtaaagggcaatgatgtttt |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45874398 |
tgatgaaattaagtatgttatgatcttcatctctccaaacatagtaaagggcaatgatgtttt |
45874460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 132 - 392
Target Start/End: Original strand, 22263633 - 22263893
Alignment:
| Q |
132 |
aaatatacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaataattcaaccctt |
231 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| ||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22263633 |
aaatttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataattcaaccctt |
22263732 |
T |
|
| Q |
232 |
ccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtgat |
331 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||| |
|
|
| T |
22263733 |
ccaatatttgtttagaccacttcttcaaagccttaagagaaacatgtttatgtttcttcctatactccctcaaattcccacttgtacaaacctcagtgat |
22263832 |
T |
|
| Q |
332 |
gaaattaagtatgttatgatcttcatctctccaaacatagtaaagggcaatgatgtttttg |
392 |
Q |
| |
|
|||||| ||| ||||||| || | ||| |||||||||| |||||| ||||||||||||||| |
|
|
| T |
22263833 |
gaaattcagtgtgttatgctccttatccctccaaacattgtaaagtgcaatgatgtttttg |
22263893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 132 - 392
Target Start/End: Complemental strand, 22270207 - 22269947
Alignment:
| Q |
132 |
aaatatacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaataattcaaccctt |
231 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| ||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22270207 |
aaatttacctggccagtatttccattgacaaacacattactgcaattgaggtctctatggatgatacaaggatcatgaacatgcaaataattcaaccctt |
22270108 |
T |
|
| Q |
232 |
ccaaaatttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtgat |
331 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||||| |
|
|
| T |
22270107 |
ccaatatttgtttagaccacttcttcaaagccttaagagaaacatgtttatgtttcttcctatactccctcaaattcccacttgtacaaacctcagtgat |
22270008 |
T |
|
| Q |
332 |
gaaattaagtatgttatgatcttcatctctccaaacatagtaaagggcaatgatgtttttg |
392 |
Q |
| |
|
|||||| ||| ||||||| || | ||| |||||||||| |||||| ||||||||||||||| |
|
|
| T |
22270007 |
gaaattcagtgtgttatgctccttatccctccaaacattgtaaagtgcaatgatgtttttg |
22269947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 137 - 389
Target Start/End: Original strand, 10082840 - 10083092
Alignment:
| Q |
137 |
tacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaataattcaacccttccaaa |
236 |
Q |
| |
|
|||||| || || ||||| |||| ||| ||||| ||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||||| |||| |
|
|
| T |
10082840 |
tacctgaccggtgtttccgttgacaaaaacattactgcaattgaggtctctatgaatgatacaaggatcatgcacatgcaaataattcaaccctttcaaa |
10082939 |
T |
|
| Q |
237 |
atttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtgatgaaat |
336 |
Q |
| |
|
|| ||||||||||||||||||||||| | || ||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
10082940 |
atctgcttagaccacttcttcaaagcttgaagagaaacatgcttatgtttcttcctatattccctcaaattcccacttgtacaaacctcagtgatgaaat |
10083039 |
T |
|
| Q |
337 |
taagtatgttatgatcttcatctctccaaacatagtaaagggcaatgatgttt |
389 |
Q |
| |
|
| ||| | |||||||| ||||| |||||||||| ||||| |||||||||||| |
|
|
| T |
10083040 |
tcagtgtattatgatcatcatccctccaaacattataaagtgcaatgatgttt |
10083092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 137 - 340
Target Start/End: Original strand, 41245605 - 41245808
Alignment:
| Q |
137 |
tacctggccagtatttccattgataaacacattgctgcaattgagatccctatgaatgatacgtggatcatgaacatgcaaataattcaacccttccaaa |
236 |
Q |
| |
|
|||||||||| ||| ||||| | ||||||||| |||||||||||||| ||||||||||| | || |||||| ||||||||||||||||||| || | |
|
|
| T |
41245605 |
tacctggccaacattcccattaacaaacacattactgcaattgagatctctatgaatgatgcaaggctcatgagtgtgcaaataattcaaccctttcaga |
41245704 |
T |
|
| Q |
237 |
atttgcttagaccacttcttcaaagccttaatagaaacatgcttatgtttcttcctataatctctcaagttcccacttgtacaaacttcagtgatgaaat |
336 |
Q |
| |
|
|| ||| | ||||| |||||||| ||||| ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
41245705 |
atctgccttgaccatttcttcaatgccttcatagaaacatgtctatgtttcttcctatactctctcaaattcccacttgtacaaacctcggtgatgaaat |
41245804 |
T |
|
| Q |
337 |
taag |
340 |
Q |
| |
|
|||| |
|
|
| T |
41245805 |
taag |
41245808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University