View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11595_low_14 (Length: 355)
Name: NF11595_low_14
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 14 - 339
Target Start/End: Complemental strand, 11664113 - 11663788
Alignment:
| Q |
14 |
aggatacgccagatgattcccatttcgcaccttctgattcgttgagagtgatgggttcgccgtcaaaggagagggcaagacggtctacagaatcatccca |
113 |
Q |
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| T |
11664113 |
aggataccccagatgattcccatttcgcaccttctgattcgttgagagtgatgggctcaccgtcaaaggagagggcaagacggtctacagaatcatccca |
11664014 |
T |
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| Q |
114 |
tgttgatgttttttgggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcatttctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11664013 |
tgttgatgttttttgggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcatttctt |
11663914 |
T |
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| Q |
214 |
ctaccgatgaaatgagcattgatgtggaggttgttatcagaaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatcaccac |
313 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
11663913 |
ctacctatgaaatgagcattgatgtggaggttgttatcagaaacaaggcagaagttgttgtctttcttgccatgaaagtaaaaagtgattccatcaccac |
11663814 |
T |
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| Q |
314 |
caatgaaacgagggtcttggcaaaca |
339 |
Q |
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|||||||||||||||||||||||||| |
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| T |
11663813 |
caatgaaacgagggtcttggcaaaca |
11663788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 28 - 338
Target Start/End: Original strand, 7344397 - 7344707
Alignment:
| Q |
28 |
gattcccatttcgcaccttctgattcgttgagagtgatgggttcgccgtcaaaggagagggcaagacggtctacagaatcatcccatgttgatgtttttt |
127 |
Q |
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| T |
7344397 |
gattcccatttcgttccttctgattcgtggagggtgatgggttcaccgtcaaaagagagggcaaggcggtctacagaatcatcccatgttgatgtttttt |
7344496 |
T |
|
| Q |
128 |
gggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcatttcttctaccgatgaaatg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||| || |
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| T |
7344497 |
tggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattgtacccatgtgaagtctcttttcatgttcttgtttcttctaccaatgaagtg |
7344596 |
T |
|
| Q |
228 |
agcattgatgtggaggttgttatcagaaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatcaccaccaatgaaacgaggg |
327 |
Q |
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||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7344597 |
agcgtttatgtggaggttgttatcggaaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatcaccaccaatgaaacgaggg |
7344696 |
T |
|
| Q |
328 |
tcttggcaaac |
338 |
Q |
| |
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||||||||||| |
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| T |
7344697 |
tcttggcaaac |
7344707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 339
Target Start/End: Complemental strand, 11669424 - 11669099
Alignment:
| Q |
14 |
aggatacgccagatgattcccatttcgcaccttctgattcgttgagagtgatgggttcgccgtcaaaggagagggcaagacggtctacagaatcatccca |
113 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||||||||| |||||| || || ||||| |||||||| |
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| T |
11669424 |
aggacacgccggatgattcccatttcgcaccttcagattcgtggagggtgatgggttctccgtcaaaggagatggcaaggcgatccacagagtcatccca |
11669325 |
T |
|
| Q |
114 |
tgttgatgttttttgggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcatttctt |
213 |
Q |
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||| | |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11669324 |
tgtggctgttttctgggcaccaaggaagagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcgtttctt |
11669225 |
T |
|
| Q |
214 |
ctaccgatgaaatgagcattgatgtggaggttgttatcagaaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatcaccac |
313 |
Q |
| |
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||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11669224 |
ctacctatgaaatgagcattgatgtgtaggtttttgtcagaaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatctccac |
11669125 |
T |
|
| Q |
314 |
caatgaaacgagggtcttggcaaaca |
339 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
11669124 |
caatgaaacgagggtcttggcaaaca |
11669099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 339
Target Start/End: Complemental strand, 11655656 - 11655331
Alignment:
| Q |
14 |
aggatacgccagatgattcccatttcgcaccttctgattcgttgagagtgatgggttcgccgtcaaaggagagggcaagacggtctacagaatcatccca |
113 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||| |||| |||||| || || ||||| |||||||| |
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| T |
11655656 |
aggacacgccggatgattcccatttcgcaccttcagattcgtggagggtgatgggttctccgtcaaatgagatggcaaggcgatccacagagtcatccca |
11655557 |
T |
|
| Q |
114 |
tgttgatgttttttgggcaccaaggaaaagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcatttctt |
213 |
Q |
| |
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||| | |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11655556 |
tgtggctgttttctgggcaccaaggaagagttggtgattgtcaaagagaataacaatggattggacccatgtgaagtctcttttcatgttctcgtttctt |
11655457 |
T |
|
| Q |
214 |
ctaccgatgaaatgagcattgatgtggaggttgttatcagaaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatcaccac |
313 |
Q |
| |
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||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11655456 |
ctacctatgaaatgagcattgatgtgtaggtttttgtcagaaacaaggcagaagttgttgtctttcttgccatggaagtaaaaagtgattccatctccac |
11655357 |
T |
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| Q |
314 |
caatgaaacgagggtcttggcaaaca |
339 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
11655356 |
caatgaaacgagggtcttggcaaaca |
11655331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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