View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11595_low_16 (Length: 338)
Name: NF11595_low_16
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 7605619 - 7605761
Alignment:
| Q |
1 |
tcaatattgagaaacaatttatatttggnnnnnnngcaacaaaaatgaaactcaagtaaaactagagatggaaccccacaagagagtgtgatagatacaa |
100 |
Q |
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| T |
7605619 |
tcaatattgagaaacaatttatatttggaaaaaaagcaacaaaaatgaaactcaagtaaaactagagatggaaccccacaagagagtgtgatagatacaa |
7605718 |
T |
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| Q |
101 |
cagatcggaagcaagatttgaaggaggaggcagcaacgttgaa |
143 |
Q |
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| T |
7605719 |
cagatcggaagcaagatttgaaggaggaggcagcaacgttgaa |
7605761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 229 - 321
Target Start/End: Original strand, 7605847 - 7605940
Alignment:
| Q |
229 |
aacttgtgtaactggtcagcaggtaagtaacttnnnnnnn-gtgaatgagatggcaagtttccattggagtgtgttagagggtgtgaccctaac |
321 |
Q |
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| T |
7605847 |
aacttgtgtaactggtcagcaggtaagtaacttaaaaaaaagtgaatgagatggcaagtttccactggagtgtgttagagggtgtgaccctaac |
7605940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 3620737 - 3620686
Alignment:
| Q |
37 |
caacaaaaatgaaactcaagtaaaactagagatggaaccccacaagagagtg |
88 |
Q |
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| T |
3620737 |
caacaaaaatgaaacccaagaaaaactagagatggaaccccataagaaagtg |
3620686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 7605245 - 7605201
Alignment:
| Q |
269 |
gtgaatgagatggcaagtttccattggagtgtgttagagggtgtg |
313 |
Q |
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| T |
7605245 |
gtgaatgatatgataagtttccattggagtgtgttaaagggtgtg |
7605201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 8942388 - 8942298
Alignment:
| Q |
37 |
caacaaaaatgaaactcaagtaaaactagagatggaaccccacaagagagtgtgatagatacaacagatcggaagcaagatttgaaggagg |
127 |
Q |
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| T |
8942388 |
caacaaaaatgaaacgcaagtaaaactagagatggaaccccacaagagagtgtgatagatacaacagatcggaagcaagatttgaaggagg |
8942298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 40670148 - 40670194
Alignment:
| Q |
273 |
atgagatggcaagtttccattggagtgtgttagagggtgtgacccta |
319 |
Q |
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| T |
40670148 |
atgagatggcaagttataatttgagtgtgttagagggtgtgacccta |
40670194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 313
Target Start/End: Complemental strand, 8942212 - 8942171
Alignment:
| Q |
272 |
aatgagatggcaagtttccattggagtgtgttagagggtgtg |
313 |
Q |
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| T |
8942212 |
aatgagatggcaagtttccattggagtgacttaaagggtgtg |
8942171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 319
Target Start/End: Original strand, 32779842 - 32779870
Alignment:
| Q |
291 |
attggagtgtgttagagggtgtgacccta |
319 |
Q |
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| T |
32779842 |
attggagtgtgttagagggtgtgacccta |
32779870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 38714829 - 38714774
Alignment:
| Q |
36 |
gcaacaaaaatgaaactcaagtaaaactagagatggaaccccacaagagagtgtga |
91 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
38714829 |
gcaacaaaaatgaaactcaagtaaaactaaagatagaaccccacaagagagtgtga |
38714774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 319
Target Start/End: Original strand, 27710054 - 27710082
Alignment:
| Q |
291 |
attggagtgtgttagagggtgtgacccta |
319 |
Q |
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| T |
27710054 |
attggagtgtgttagagggtgtgacccta |
27710082 |
T |
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