View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11595_low_19 (Length: 313)
Name: NF11595_low_19
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 303
Target Start/End: Complemental strand, 18117343 - 18117045
Alignment:
| Q |
5 |
catgatcttgctctgtatgttgcaaaagaggagtttgtagtggttaaatcacatattcttagattaccagagcaggtaaagcatttatcaatcgttgaaa |
104 |
Q |
| |
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|||||||||||| | |||||||||||| |||||||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||| ||||||| |
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| T |
18117343 |
catgatcttgctttctatgttgcaaaaaaggagtttgtagtggttaaatcccacattcttagattacctgagcgagtaaagcatttatcaattgttgaaa |
18117244 |
T |
|
| Q |
105 |
atgtttcaatttgcgattctttgttccccaagtcaaggagtgtgagaagtatattgtttcccattaaaggagtgagtcttgacagtgaaactcttttaaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||||||||| |
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| T |
18117243 |
atgtttcaatttgcgattctttgttccccaagtcaaggagtgtgagaactatattgtttctcattaaagtagtgagtattgacagtgaaactcttttaaa |
18117144 |
T |
|
| Q |
205 |
tacatgggtagaaagatacaaatacttgcgagttttagatttaagaaattctttgattgagactctacctaattcaattgctacattagaacgcctatg |
303 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
18117143 |
tacatgaatagaaagatacaaatacttgcgagttttagatttaagaaattcttcgatcgagactctacctaattcaattgctacattagaacgcctatg |
18117045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 294
Target Start/End: Complemental strand, 18124996 - 18124707
Alignment:
| Q |
5 |
catgatcttgctctgtatgttgcaaaagaggagtttgtagtggttaaatcacatattcttagattaccagagcaggtaaagcatttatcaatcgttgaaa |
104 |
Q |
| |
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||||||||| | |||||||||| |||| ||||||| ||||||| | |||||||||| | |||| ||||| || ||||||||||| ||||||| |
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| T |
18124996 |
catgatctttcattgtatgttgctaaagcggagtttctagtggtagactcacatattcaaaatatacctgagcaagtgcgacatttatcaattgttgaaa |
18124897 |
T |
|
| Q |
105 |
atgtttcaatttgcgattctttgttccccaagtcaaggagtgtgagaagtatattgtttcccattaaaggagtgagtcttgacagtgaaactcttttaaa |
204 |
Q |
| |
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||| |||| || || || |||| |||||||||||||| | ||||||||||||||||||||| ||| | |||||| ||||||| |||||| ||||||| | |
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| T |
18124896 |
atgattcacttggccatactttattccccaagtcaagaaatgtgagaagtatattgtttcctattgatggagtgggtcttgatagtgaatctcttttgta |
18124797 |
T |
|
| Q |
205 |
tacatgggtagaaagatacaaatacttgcgagttttagatttaagaaattctttgattgagactctacctaattcaattgctacattaga |
294 |
Q |
| |
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|| |||| || ||||||||||| |||||| |||| |||||||| |||||| | ||||| |||||| ||||||||||||| |||||| |
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| T |
18124796 |
taaatggatatcaagatacaaattcttgcggcttttgaatttaagatattcttcgtttgagtatctaccaaattcaattgctaaattaga |
18124707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 9 - 210
Target Start/End: Original strand, 35406798 - 35406999
Alignment:
| Q |
9 |
atcttgctctgtatgttgcaaaagaggagtttgtagtggttaaatcacatattcttagattaccagagcaggtaaagcatttatcaatcgttgaaaatgt |
108 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||| ||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||| |
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| T |
35406798 |
atcttgctctctatgttgcaaaagaggagtttgtagcagttaaatcccattttcttagattacctgagcaagtaaagcatttatcaattgttgaaaatgt |
35406897 |
T |
|
| Q |
109 |
ttcaatttgcgattctttgttccccaagtcaaggagtgtgagaagtatattgtttcccattaaaggagtgagtcttgacagtgaaactcttttaaataca |
208 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
35406898 |
ttcaatttcccattctttgttccccaagtcaaggagtgtgagaactatattgttttccgttaaaggagtgagtcttgatagtgaaacttttttaaataca |
35406997 |
T |
|
| Q |
209 |
tg |
210 |
Q |
| |
|
|| |
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|
| T |
35406998 |
tg |
35406999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 35407002 - 35407065
Alignment:
| Q |
235 |
agttttagatttaagaaattctttgattgagactctacctaat---tcaattgctacattagaa |
295 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| |||| |||||||||| ||||||| |
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|
| T |
35407002 |
agttttagatttaagaaattctatgtttgagactctacttaattgatcaattgctaaattagaa |
35407065 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 283
Target Start/End: Complemental strand, 35951703 - 35951507
Alignment:
| Q |
87 |
atttatcaatcgttgaaaatgtttcaatttgcgattctttgttccccaagtcaaggagtgtgagaagtatattgtttcccattaaaggagtgagtcttga |
186 |
Q |
| |
|
|||||||||| ||||||||||||||| || | | |||||||||||| || || |||||||||||||| | ||||||||| | |||||| ||||| | |
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|
| T |
35951703 |
atttatcaattgttgaaaatgtttcacttgaccgtgttttgttccccaattccagaggtgtgagaagtatactatttcccattgatggagtgggtcttaa |
35951604 |
T |
|
| Q |
187 |
cagtgaaactcttttaaatacatgggtagaaagatacaaatacttgcgagttttagatttaagaaattctttgattgagactctacctaattcaatt |
283 |
Q |
| |
|
|||| || | || | ||||||||||| |||||| ||||||||||| |||||||||||| |||||| |||| ||||| || ||||||||| |
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|
| T |
35951603 |
aagtgtaagtgttctcgatacatgggtatcaagatataaatacttgcgctatttagatttaagtgattcttcatttgaaactctgcccaattcaatt |
35951507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 287
Target Start/End: Complemental strand, 32726731 - 32726572
Alignment:
| Q |
128 |
ttccccaagtcaaggagtgtgagaagtatattgtttcccattaaaggagtgagtcttgacagtgaaactcttttaaatacatgggtagaaagatacaaat |
227 |
Q |
| |
|
||||||||||| | ||| |||||| ||| || |||||||| ||||||||| | ||||| ||| ||||| | | || |||||| || ||||||||||| |
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|
| T |
32726731 |
ttccccaagtccaaaagtttgagaactattttatttcccatgaaaggagtgggccttgatagtcaaactttgctgaacacatggatatcaagatacaaat |
32726632 |
T |
|
| Q |
228 |
acttgcgagttttagatttaagaaattctttgattgagactctacctaattcaattgcta |
287 |
Q |
| |
|
|||||||| ||||| ||||||| |||||| |||| || |||||||| || ||||||| |
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|
| T |
32726631 |
acttgcgatatttaggtttaagagattcttcctttgataccctacctaactcgattgcta |
32726572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 35981166 - 35981035
Alignment:
| Q |
126 |
tgttccccaagtcaaggagtgtgagaagtatattgtttcccattaaaggagtgagtcttgacagtgaaactcttttaaatacatgggtagaaagatacaa |
225 |
Q |
| |
|
|||||||||||||| | || || |||| | |||| |||||||| |||||| || |||||| ||||||||||| || ||| |||| || ||||||||| |
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|
| T |
35981166 |
tgttccccaagtcacgaagcgtaagaactttattatttcccatcaaaggactgggtcttgctagtgaaactctgctagatatatggatatcaagatacaa |
35981067 |
T |
|
| Q |
226 |
atacttgcgagttttagatttaagaaattctt |
257 |
Q |
| |
|
|||||| || |||||||||||| ||||||| |
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|
| T |
35981066 |
atacttaagatatttagatttaagtaattctt |
35981035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 257
Target Start/End: Complemental strand, 36002578 - 36002447
Alignment:
| Q |
126 |
tgttccccaagtcaaggagtgtgagaagtatattgtttcccattaaaggagtgagtcttgacagtgaaactcttttaaatacatgggtagaaagatacaa |
225 |
Q |
| |
|
|||||||||||||| | || || |||| | |||| |||||||| |||||| || |||||| ||||||||||| || ||| |||| || ||||||||| |
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|
| T |
36002578 |
tgttccccaagtcacgaagcgtaagaactttattatttcccatcaaaggactgggtcttgctagtgaaactctgctagatatatggatatcaagatacaa |
36002479 |
T |
|
| Q |
226 |
atacttgcgagttttagatttaagaaattctt |
257 |
Q |
| |
|
|||||| || |||||||||||| ||||||| |
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|
| T |
36002478 |
atacttaagatatttagatttaagtaattctt |
36002447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 36218395 - 36218438
Alignment:
| Q |
5 |
catgatcttgctctgtatgttgcaaaagaggagtttgtagtggt |
48 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
36218395 |
catgatcttgcaatgtatgttgcaaaagaggagtttgtaatggt |
36218438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 35946069 - 35946031
Alignment:
| Q |
5 |
catgatcttgctctgtatgttgcaaaagaggagtttgta |
43 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
35946069 |
catgatcttgctctgtatgttgcaagagaggactttgta |
35946031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 284
Target Start/End: Original strand, 36211454 - 36211595
Alignment:
| Q |
143 |
agtgtgagaagtatattgtttcccattaaaggagtgagtcttgacagtgaaactcttttaaatacatgggtagaaagatacaaatacttgcgagttttag |
242 |
Q |
| |
|
|||||||||| |||| | ||| |||| ||||||||| || ||| ||||||| | | ||| || ||||| || ||||||||||||||| | ||||| |
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|
| T |
36211454 |
agtgtgagaactatactattttccatcaaaggagtgggtattggcagtgaatcaatgttagatgcatggatattaagatacaaatacttatcaagtttag |
36211553 |
T |
|
| Q |
243 |
atttaagaaattctttgattgagactctacctaattcaattg |
284 |
Q |
| |
|
||||||| || || || ||| |||||||||||||||||||| |
|
|
| T |
36211554 |
atttaagtgatactctgtttgtgactctacctaattcaattg |
36211595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 249
Target Start/End: Original strand, 26329509 - 26329672
Alignment:
| Q |
86 |
catttatcaatcgttgaaaatgtttcaatttgcgattctttgttccccaagtcaaggagtgtgagaagtatattgtttcccattaaaggagtgagtcttg |
185 |
Q |
| |
|
||||||||||| |||||||||| ||| || | || ||||||| ||||||| | |||||||||| ||| |||| |||||| ||||||| || | | |
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|
| T |
26329509 |
catttatcaattgttgaaaatgactcacttggtcatgctttgttttccaagtcgaaaagtgtgagaactattttgtgtcccatccaaggagtaggtgtcg |
26329608 |
T |
|
| Q |
186 |
acagtgaaactcttttaaatacatgggtagaaagatacaaatacttgcgagttttagatttaag |
249 |
Q |
| |
|
| ||||||||||| || || ||||| || |||||||||||||||||| |||||||||||| |
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|
| T |
26329609 |
atagtgaaactctcttggattcatggatatcaagatacaaatacttgcgctatttagatttaag |
26329672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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