View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11595_low_20 (Length: 305)
Name: NF11595_low_20
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 36 - 295
Target Start/End: Complemental strand, 22303568 - 22303309
Alignment:
| Q |
36 |
aaatttgattctgagtattttcaaaattttgatgatcttggaaaagtgtcaaaatgttattttatttacatggatattcttatattgagaagatctacta |
135 |
Q |
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| T |
22303568 |
aaatttgattctgagtattttcaaaattttgatgatcttggaaaagtgtcaaagtgttattttatttacatggatattcttatattgagaagatctacta |
22303469 |
T |
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| Q |
136 |
atgtattgatttggnnnnnnngacaaaaaataataattttggtgtagttttcgtattagccgaaccaaaaagggtaaaatggttagtttttgtgtgtctt |
235 |
Q |
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| T |
22303468 |
atgtattgatttggtttttttgacaaaaaataataattttggtgtagttttcgtattagccgaaccaaaaagggtaaaatggttagtttttgtgtgtctt |
22303369 |
T |
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| Q |
236 |
catgctgatatgatctgatcaatggattcacctcattgaaatcttcgaaatggccctatg |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22303368 |
catgctgatatgatctgatcaatggattcacctcattgaaatcttcgaaatggccctatg |
22303309 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 21910787 - 21910740
Alignment:
| Q |
77 |
aaaagtgtcaaaatgttattttatttacatggatattcttatattgag |
124 |
Q |
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||||| ||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
21910787 |
aaaagcgtcaaaatgttattttatttacatggatagtctaatattgag |
21910740 |
T |
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