View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11595_low_21 (Length: 303)
Name: NF11595_low_21
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 47 - 285
Target Start/End: Complemental strand, 33268864 - 33268626
Alignment:
| Q |
47 |
atcgagaattttagttgcaactaacttacgtcccttgtcgaaatcttatgcaacgaatcaacagatcgagaagcaacctgatgaagaaaatataaacgaa |
146 |
Q |
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| T |
33268864 |
atcgagaattttagttgcaactaacttacgtcccttgtcgaaatcttatgcaacgaatcaacagatcgagaagcaacctgatgaagaaaatataaacgaa |
33268765 |
T |
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| Q |
147 |
ggtatatcagagttttcgtcagtcatatcatatgtttatctttataataaccagcatccatgctattcctacgttcatagcaacagaaagaaactccaaa |
246 |
Q |
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| T |
33268764 |
ggtatatcagagttttcgtcagtcatatcatatgtttatctttataataaccagcatccatgctattcctacgttcatagcaacagaaagaaactccaaa |
33268665 |
T |
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| Q |
247 |
tctgcactctttttctgagttccaaatgaaggattcatt |
285 |
Q |
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| T |
33268664 |
tctgcactctttttctttgttccaaatgaaggattcatt |
33268626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 284
Target Start/End: Original strand, 12579824 - 12580055
Alignment:
| Q |
52 |
gaattttagttgcaactaacttacgtcccttgtcgaaatcttatgcaacgaatcaacagatcgagaagcaacctgatgaagaaaatataaacgaaggtat |
151 |
Q |
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| T |
12579824 |
gaatttaagatgcaactgacttacatctcttgttgaagtcttatgcaaagaataaacagcttgagaagcaacctaatgaaacaaaaatatggaacaatat |
12579923 |
T |
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| Q |
152 |
atcagagttttcgtcagtcatatcatatgtttatctttataataaccagcatccatgctattcct-acgttcatagcaacagaaagaaactccaaatctg |
250 |
Q |
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| T |
12579924 |
attagagttcgcatcagtcagatcatatgtttatatttt--ataaacaacatcaatgctattgcttaccttcatagcaacagaaagaaaatccaaatctg |
12580021 |
T |
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| Q |
251 |
cactctttttctgagttccaaatgaaggattcat |
284 |
Q |
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| T |
12580022 |
caccctttttccgagttccaaatggaggattcat |
12580055 |
T |
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