View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11595_low_22 (Length: 297)

Name: NF11595_low_22
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11595_low_22
NF11595_low_22
[»] chr2 (17 HSPs)
chr2 (19-289)||(32534099-32534355)
chr2 (19-239)||(32174106-32174324)
chr2 (63-239)||(32147545-32147719)
chr2 (63-239)||(32156374-32156548)
chr2 (97-239)||(32212171-32212311)
chr2 (73-239)||(32118463-32118628)
chr2 (125-239)||(32182298-32182410)
chr2 (71-239)||(32152314-32152475)
chr2 (19-163)||(32182135-32182279)
chr2 (129-239)||(32157550-32157658)
chr2 (125-239)||(32153370-32153482)
chr2 (114-239)||(2821292-2821414)
chr2 (111-239)||(32207096-32207222)
chr2 (41-161)||(2821410-2821529)
chr2 (153-239)||(32110280-32110364)
chr2 (238-289)||(32211734-32211785)
chr2 (238-274)||(32158507-32158543)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 19 - 289
Target Start/End: Original strand, 32534099 - 32534355
Alignment:
Q  19 caaaggatgagagtatttacttattagcttagcttaatgttttatagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534099 caaaggatgagagtatttacttattagcttagcttaatgttttatagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctt 32534198  T
Q  119 tgatactttcttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatccttt 218  Q
    ||||| |||||||||||||||||||||||            ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534199 tgatattttcttcattccttacctcttct------------ttggcttg--gagggatttgataaggtcttgtaggcattctgtagcatcaacatccttt 32534284  T
Q  219 gttagctattctgcaatttcataccttattgtatccattatcaacaacttcttcattttcatcttcttctc 289  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534285 gttagctattctacaatttcataccttattgtatccattatcaacaacttcttcattttcatcttcttctc 32534355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 32174106 - 32174324
Alignment:
Q  19 caaaggatgagagtatttacttattagcttagcttaatgttttatagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctt 118  Q
    |||||||||||| | | ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  32174106 caaaggatgagaatgtctacttatgagcttagcttaatgttttacagtacagaaccaaacatgacctatatattttctctacctagttcaccttcttctt 32174205  T
Q  119 tgatactttcttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatccttt 218  Q
    | ||  ||||||||||  |||||||||| |||||||||||||| |||||  |||| || | ||||||||||||||||||||||||||||||  ||||||     
T  32174206 taatgttttcttcattttttacctcttccttgatcattttctttgcttg--gaggaatattataaggtcttgtaggcattctgtagcatcacaatccttg 32174303  T
Q  219 gttagctattctgcaatttca 239  Q
    ||||||| |||||||||||||    
T  32174304 gttagctcttctgcaatttca 32174324  T

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Target: chr2; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 63 - 239
Target Start/End: Original strand, 32147545 - 32147719
Alignment:
Q  63 tagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctttgatactttcttcattccttacctcttctttgatcattttcttg 162  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||| || ||| |||||| |||||||||||||||    
T  32147545 tagtacataaccaaacatggcctatatattttctctacctagttcaccttcttctttgttattttcttcaatctttatctcttccttgatcattttcttg 32147644  T
Q  163 gcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgttagctattctgcaatttca 239  Q
    |||||  |||| |||||||||||||||||||||||||||||||||||  ||||||||||| || |||||||||||||    
T  32147645 gcttg--gaggaatttgataaggtcttgtaggcattctgtagcatcacaatcctttgttaactcttctgcaatttca 32147719  T

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Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 63 - 239
Target Start/End: Original strand, 32156374 - 32156548
Alignment:
Q  63 tagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctttgatactttcttcattccttacctcttctttgatcattttcttg 162  Q
    ||||||| ||||||||||||||||||||||||| || |||| ||||  ||||||||||| | ||||||| ||| ||| |||||| ||  ||||||||||     
T  32156374 tagtacataaccaaacatggcctatatattttcactccctagttcagattcttctttgacattttcttccttctttatctcttcctttttcattttcttt 32156473  T
Q  163 gcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgttagctattctgcaatttca 239  Q
     |||||||  | |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  32156474 acttggag--gaatttgataaggtcttgtaggcattctgtagcatcaacatcctttgtaagctcttctgcaatttca 32156548  T

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Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 32212311 - 32212171
Alignment:
Q  97 ctacctaattcaccttcttctttgatactttcttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggca 196  Q
    ||||||| ||||  ||||||||||||| ||||||||||  ||| |||||| || || |||||||||||||||||  ||||||||||||||||||||||||    
T  32212311 ctacctagttcatgttcttctttgatattttcttcattttttatctcttccttcatgattttcttggcttggag--ggatttgataaggtcttgtaggca 32212214  T
Q  197 ttctgtagcatcaacatcctttgttagctattctgcaatttca 239  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  32212213 ttctgtagcatcaacatcctttgttagctcttctgcaatttca 32212171  T

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Target: chr2; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 73 - 239
Target Start/End: Original strand, 32118463 - 32118628
Alignment:
Q  73 ccaaacatggcctatatattttctctacctaattcaccttcttctttgatactttcttcattcctt-acctcttctttgatcattttcttggcttggaga 171  Q
    ||||||||| ||||||||||||||||| ||| ||||  ||||||||||||| |||||||||||  | | |||||| |||||||||||||||||||||||     
T  32118463 ccaaacatgacctatatattttctctatctagttcatgttcttctttgatattttcttcattctatcatctcttccttgatcattttcttggcttggag- 32118561  T
Q  172 gggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgttagctattctgcaatttca 239  Q
     |||||  ||||||||||||||||||||||||||||||  |||||| ||||||| ||| |||||||||    
T  32118562 -ggattcaataaggtcttgtaggcattctgtagcatcacaatccttcgttagctcttcagcaatttca 32118628  T

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Target: chr2; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 32182298 - 32182410
Alignment:
Q  125 tttcttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgttagc 224  Q
    ||||||||||| |||||||||| |||||||||||||||||||| ||  | |||||||||||||||||||||||||||||||||||  |||||||||||||    
T  32182298 tttcttcattctttacctcttccttgatcattttcttggcttgcag--gaatttgataaggtcttgtaggcattctgtagcatcacaatcctttgttagc 32182395  T
Q  225 tattctgcaatttca 239  Q
    | |||| ||||||||    
T  32182396 tcttctccaatttca 32182410  T

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Target: chr2; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 239
Target Start/End: Original strand, 32152314 - 32152475
Alignment:
Q  71 aaccaaacatggcctatatattttctctacctaattcaccttcttctttgatactttcttcattccttacctcttctttgatcattttcttggcttggag 170  Q
    |||||||||| ||||||||||||||||||| || ||||  |||| |||||||| ||||||||||  | |  ||||| ||||||||||||||||||||  |    
T  32152314 aaccaaacatagcctatatattttctctacatagttcatgttctcctttgataatttcttcatttttaatgtcttccttgatcattttcttggcttg--g 32152411  T
Q  171 agggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgttagctattctgcaatttca 239  Q
    | ||||||     ||||||||||||||||||||||||||  |||||||||||||| |||||||||||||    
T  32152412 aaggattt-----ggtcttgtaggcattctgtagcatcacaatcctttgttagctcttctgcaatttca 32152475  T

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Target: chr2; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 32182135 - 32182279
Alignment:
Q  19 caaaggatgagagtatttacttattagcttagcttaatgttttatagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctt 118  Q
    |||||||||||| |   ||||||| || ||||||||||||||||  ||||| ||||||||||  ||||||||||||| ||||||| ||||||||||||||    
T  32182135 caaaggatgagaatgactacttatgagtttagcttaatgttttacggtacataaccaaacataacctatatattttcactacctagttcaccttcttctt 32182234  T
Q  119 tgatactttcttcattccttacctcttctttgatcattttcttgg 163  Q
    ||||| ||||||||||| ||  |||||| | ||||||||||||||    
T  32182235 tgatattttcttcattctttgtctcttcctcgatcattttcttgg 32182279  T

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Target: chr2; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 129 - 239
Target Start/End: Original strand, 32157550 - 32157658
Alignment:
Q  129 ttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgttagctatt 228  Q
    ||||||||| | |||||| |||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||  ||||||||| |||| ||    
T  32157550 ttcattcctaatctcttccttgatcattttcttggcttggag--gaatttgataaggtcttgtaggcattctgtagcatcacaatcctttgtgagctctt 32157647  T
Q  229 ctgcaatttca 239  Q
    || ||||||||    
T  32157648 ctccaatttca 32157658  T

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Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 32153370 - 32153482
Alignment:
Q  125 tttcttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgttagc 224  Q
    ||||||||||| ||| ||| | |||||| |||||||||||||||||  | |||||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  32153370 tttcttcattctttatctcatgtttgatgattttcttggcttggag--gaatttgataaggtattgtaggcattctgcagcatcaacctcctttgttagc 32153467  T
Q  225 tattctgcaatttca 239  Q
    | |||| ||||||||    
T  32153468 tcttctacaatttca 32153482  T

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Target: chr2; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 2821414 - 2821292
Alignment:
Q  114 ttctttgatactttcttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacat 213  Q
    |||||||||  ||||||||||| ||| |||||| || ||| ||| ||||||||||||  | |||||||||||||||||||||||| ||||||||||  ||    
T  2821414 ttctttgatgttttcttcattctttatctcttccttcatcgttt-cttggcttggag--gaatttgataaggtcttgtaggcattttgtagcatcacaat 2821318  T
Q  214 cctttgttagctattctgcaatttca 239  Q
    |||||||||||| |||||||||||||    
T  2821317 cctttgttagctcttctgcaatttca 2821292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 32207222 - 32207096
Alignment:
Q  111 ttcttctttgatactttcttcattccttacctcttctttgatcattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaa 210  Q
    ||||||||||| | ||||||||||  | |  ||||| |||||||||||||||||||||||  ||||||||||||||||| ||| |||||||| ||||||     
T  32207222 ttcttctttgacattttcttcattattaatgtcttccttgatcattttcttggcttggag--ggatttgataaggtcttctagacattctgttgcatcac 32207125  T
Q  211 catcctttgttagctattctgcaatttca 239  Q
      ||||||||||||| |||||||||||||    
T  32207124 agtcctttgttagctcttctgcaatttca 32207096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 2821529 - 2821410
Alignment:
Q  41 attagcttagcttaatgttttatagtacagaaccaaacatggcctatatattttctctacctaattcaccttcttctttgatactttcttcattccttac 140  Q
    |||||||||||||| | |||  ||||||| ||||||||||||||||||||||||||||||||| ||||  |||||||| |||| ||||||||||| |||     
T  2821529 attagcttagcttattatttc-tagtacataaccaaacatggcctatatattttctctacctagttcagattcttcttggatattttcttcattctttat 2821431  T
Q  141 ctcttctttgatcattttctt 161  Q
    ||| || | ||||||||||||    
T  2821430 ctcatcctcgatcattttctt 2821410  T

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Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 32110280 - 32110364
Alignment:
Q  153 cattttcttggcttggagagggatttgataaggtcttgtaggcattctgtagcatcaacatcctttgttagctattctgcaatttca 239  Q
    ||||||||||||||||||  | |||||||||||||||||| ||||||||||||||||||||||||||||| |  |||||||||||||    
T  32110280 cattttcttggcttggag--gaatttgataaggtcttgtaagcattctgtagcatcaacatcctttgttaacacttctgcaatttca 32110364  T

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Target: chr2; HSP #16
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 32211785 - 32211734
Alignment:
Q  238 cataccttattgtatccattatcaacaacttcttcattttcatcttcttctc 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32211785 cataccttattgtatccattatcaacaacttcttcattttcatcttcttctc 32211734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 32158507 - 32158543
Alignment:
Q  238 cataccttattgtatccattatcaacaacttcttcat 274  Q
    |||||||||||||||||||||||||||| ||||||||    
T  32158507 cataccttattgtatccattatcaacaatttcttcat 32158543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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