View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11595_low_24 (Length: 226)

Name: NF11595_low_24
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11595_low_24
NF11595_low_24
[»] chr8 (8 HSPs)
chr8 (52-208)||(36122415-36122571)
chr8 (154-209)||(9014689-9014743)
chr8 (154-209)||(39821879-39821933)
chr8 (149-203)||(8999909-8999963)
chr8 (156-202)||(41955678-41955723)
chr8 (154-207)||(11708981-11709033)
chr8 (154-211)||(17704008-17704064)
chr8 (154-210)||(6223337-6223392)
[»] chr1 (8 HSPs)
chr1 (154-209)||(3481555-3481610)
chr1 (154-209)||(33020055-33020109)
chr1 (154-208)||(21400036-21400089)
chr1 (149-207)||(50040346-50040403)
chr1 (154-207)||(25532968-25533020)
chr1 (157-206)||(28393773-28393822)
chr1 (157-206)||(45190284-45190332)
chr1 (154-206)||(27533238-27533289)
[»] chr4 (8 HSPs)
chr4 (157-209)||(21623431-21623482)
chr4 (154-204)||(8494982-8495031)
chr4 (154-207)||(2888868-2888921)
chr4 (154-207)||(13276124-13276176)
chr4 (154-207)||(20799408-20799460)
chr4 (154-207)||(24665005-24665057)
chr4 (154-207)||(50362153-50362205)
chr4 (158-202)||(45665056-45665100)
[»] chr6 (7 HSPs)
chr6 (154-209)||(34701142-34701196)
chr6 (154-206)||(21029381-21029433)
chr6 (165-207)||(14333472-14333514)
chr6 (157-202)||(1368212-1368257)
chr6 (157-206)||(4826288-4826336)
chr6 (158-202)||(7897143-7897187)
chr6 (154-206)||(23629852-23629903)
[»] chr2 (11 HSPs)
chr2 (154-209)||(24592858-24592912)
chr2 (154-209)||(26999105-26999159)
chr2 (160-205)||(32854535-32854580)
chr2 (51-92)||(40262352-40262393)
chr2 (154-206)||(16310823-16310874)
chr2 (154-204)||(11931600-11931649)
chr2 (154-207)||(20455886-20455938)
chr2 (154-207)||(29544622-29544674)
chr2 (154-207)||(30089044-30089096)
chr2 (154-207)||(30125648-30125700)
chr2 (154-206)||(11560493-11560544)
[»] chr5 (6 HSPs)
chr5 (154-209)||(6489002-6489056)
chr5 (154-208)||(15889406-15889459)
chr5 (159-200)||(6734765-6734806)
chr5 (154-207)||(19759924-19759976)
chr5 (174-207)||(21139162-21139195)
chr5 (156-204)||(41417760-41417807)
[»] chr3 (6 HSPs)
chr3 (154-209)||(28130946-28131000)
chr3 (154-204)||(24120437-24120487)
chr3 (154-207)||(18870739-18870791)
chr3 (154-206)||(18554724-18554776)
chr3 (157-209)||(35347307-35347359)
chr3 (154-206)||(52454992-52455044)
[»] chr7 (3 HSPs)
chr7 (154-207)||(3830063-3830115)
chr7 (154-207)||(35224113-35224165)
chr7 (158-206)||(2962741-2962788)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 6e-67; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 52 - 208
Target Start/End: Original strand, 36122415 - 36122571
Alignment:
Q  52 aactcatgtttggcttctaaaaaagtgatgccaaacacataatttgtctttcttctcaaacatagagtcaggttgcaagtcatgtccgtctatccgtttg 151  Q
    |||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||    
T  36122415 aactcacgtttcgcttctaaaaaagtgatgccaaacacatactttgtctttcttctcaaacatagagtcgggttgcaagtcgtgcccgtctatccgtttg 36122514  T
Q  152 tttcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtct 208  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36122515 tttcctcgtgaacttagttcaattggtagggacaaatgcataatatatgcaaggtct 36122571  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 9014743 - 9014689
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtctg 209  Q
    ||||||||||||||| ||||||||||| ||  ||| ||||||||||||||||||||    
T  9014743 tcctcgtgaacttagctcaattggtagcga-caatacataatatatgcaaggtctg 9014689  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 39821879 - 39821933
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtctg 209  Q
    ||||||||| ||||| ||| |||||||||| || ||||||||||||||||||||||    
T  39821879 tcctcgtgagcttagctcagttggtagggacaa-tgcataatatatgcaaggtctg 39821933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 8999963 - 8999909
Alignment:
Q  149 ttgtttcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaa 203  Q
    |||| ||||||||| ||||| ||| ||||||| || |||||||||||||||||||    
T  8999963 ttgtgtcctcgtgagcttagctcagttggtagagacaaatgcataatatatgcaa 8999909  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 41955678 - 41955723
Alignment:
Q  156 ctcgtgaacttagttcaattggtagggagaaatgcataatatatgca 202  Q
    |||||||||||| |||||||||||| ||| |||||||||||||||||    
T  41955678 ctcgtgaacttaattcaattggtagagag-aatgcataatatatgca 41955723  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 11708981 - 11709033
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    ||||||||| ||||| ||| |||||||||| || ||||||||||||||||||||    
T  11708981 tcctcgtgagcttagctcagttggtagggacaa-tgcataatatatgcaaggtc 11709033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 17704008 - 17704064
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtctgtg 211  Q
    ||||||||| ||||| ||| |||||| ||| || ||||||||||||||||||||||||    
T  17704008 tcctcgtgagcttagctcagttggtaaggacaa-tgcataatatatgcaaggtctgtg 17704064  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 6223337 - 6223392
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtctgt 210  Q
    |||||| || ||||| ||| |||||||||| ||| ||||||||||||||||||||||    
T  6223337 tcctcgcgagcttagctcacttggtagggacaaa-gcataatatatgcaaggtctgt 6223392  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 3481555 - 3481610
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtctg 209  Q
    ||||||||| ||||| ||| |||||||||| |||||||||||||||||||||||||    
T  3481555 tcctcgtgagcttagctcagttggtagggacaaatgcataatatatgcaaggtctg 3481610  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 33020109 - 33020055
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtctg 209  Q
    ||||||||| ||||| |||| ||||||||| || ||||||||||||||||||||||    
T  33020109 tcctcgtgagcttagctcaactggtagggacaa-tgcataatatatgcaaggtctg 33020055  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 21400089 - 21400036
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtct 208  Q
    ||||||||| ||||| ||| |||||||||| || |||||||||||||||||||||    
T  21400089 tcctcgtgagcttagctcagttggtagggacaa-tgcataatatatgcaaggtct 21400036  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 50040346 - 50040403
Alignment:
Q  149 ttgtttcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    |||||||||||||||||||| ||| ||||| ||||  ||||||||| ||||||||||||    
T  50040346 ttgtttcctcgtgaacttagctcagttggttggga-caatgcataaaatatgcaaggtc 50040403  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 25532968 - 25533020
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    ||||||||| ||||||||| |||||| ||| || ||||||||||||||||||||    
T  25532968 tcctcgtgagcttagttcagttggtatggacaa-tgcataatatatgcaaggtc 25533020  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 28393822 - 28393773
Alignment:
Q  157 tcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggt 206  Q
    |||||| ||||  ||| |||||||||| ||||||||||||||||||||||    
T  28393822 tcgtgagcttatctcagttggtagggacaaatgcataatatatgcaaggt 28393773  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 45190332 - 45190284
Alignment:
Q  157 tcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggt 206  Q
    |||||||||||||||| |||||| ||| || |||||||||||||||||||    
T  45190332 tcgtgaacttagttcagttggtatggacaa-tgcataatatatgcaaggt 45190284  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 27533238 - 27533289
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggt 206  Q
    ||||||||| ||||| ||| |||||||||| || |||||||||||||||||||    
T  27533238 tcctcgtgagcttagatcagttggtagggacaa-tgcataatatatgcaaggt 27533289  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 21623482 - 21623431
Alignment:
Q  157 tcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtctg 209  Q
    |||||||||||||||| |||||||||| || ||||||||||||||||||||||    
T  21623482 tcgtgaacttagttcagttggtagggacaa-tgcataatatatgcaaggtctg 21623431  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 8494982 - 8495031
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaag 204  Q
    ||||||||||||||| ||| ||||||||||  |||||||||||||||||||    
T  8494982 tcctcgtgaacttagctcagttggtaggga-caatgcataatatatgcaag 8495031  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 2888868 - 2888921
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    |||| |||| ||||| ||| |||||||||| ||||| |||||||||||||||||    
T  2888868 tccttgtgagcttagctcagttggtagggacaaatgtataatatatgcaaggtc 2888921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 13276124 - 13276176
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    ||||||||| ||||  |||||||||||||| || ||||||||||||||||||||    
T  13276124 tcctcgtgagcttaactcaattggtagggacaa-tgcataatatatgcaaggtc 13276176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 20799460 - 20799408
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    ||||||||| ||||| ||| |||||||||| || ||||||||||||||||||||    
T  20799460 tcctcgtgagcttagctcagttggtagggacaa-tgcataatatatgcaaggtc 20799408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 24665057 - 24665005
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    ||||||||| ||||| ||| |||||| |||||| ||||||||||||||||||||    
T  24665057 tcctcgtgagcttagctcagttggtatggagaa-tgcataatatatgcaaggtc 24665005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 50362205 - 50362153
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    ||||||||| ||||| ||| |||||||||| || ||||||||||||||||||||    
T  50362205 tcctcgtgagcttagctcagttggtagggacaa-tgcataatatatgcaaggtc 50362153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 45665100 - 45665056
Alignment:
Q  158 cgtgaacttagttcaattggtagggagaaatgcataatatatgca 202  Q
    |||||| |||| ||| |||||||||| ||||||||||||||||||    
T  45665100 cgtgaatttagctcagttggtagggacaaatgcataatatatgca 45665056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 34701142 - 34701196
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtctg 209  Q
    ||||||||||||||||||| |||||| |||  ||||||||||||||||||||||||    
T  34701142 tcctcgtgaacttagttcagttggta-ggaacaatgcataatatatgcaaggtctg 34701196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 21029433 - 21029381
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggt 206  Q
    ||||||||| || || ||| |||||||||| ||||||||||||||||||||||    
T  21029433 tcctcgtgagctgagctcagttggtagggacaaatgcataatatatgcaaggt 21029381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Complemental strand, 14333514 - 14333472
Alignment:
Q  165 ttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    |||||||| |||| ||||| |||||||||||||||||||||||    
T  14333514 ttagttcagttggcagggacaaatgcataatatatgcaaggtc 14333472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 1368257 - 1368212
Alignment:
Q  157 tcgtgaacttagttcaattggtagggagaaatgcataatatatgca 202  Q
    |||||||||||| ||| |||||||||| ||||||| ||||||||||    
T  1368257 tcgtgaacttagctcagttggtagggacaaatgcacaatatatgca 1368212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 4826288 - 4826336
Alignment:
Q  157 tcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggt 206  Q
    |||||||||||||||||||||||| ||  ||||||||||||||| |||||    
T  4826288 tcgtgaacttagttcaattggtagaga-caatgcataatatatgtaaggt 4826336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 7897187 - 7897143
Alignment:
Q  158 cgtgaacttagttcaattggtagggagaaatgcataatatatgca 202  Q
    ||||| ||||| ||| |||||||||| ||||||||||||||||||    
T  7897187 cgtgagcttagatcagttggtagggataaatgcataatatatgca 7897143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 23629903 - 23629852
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggt 206  Q
    ||||||||||||||| ||||||||||  ||  |||||||||||||||||||||    
T  23629903 tcctcgtgaacttagctcaattggtaatga-caatgcataatatatgcaaggt 23629852  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 24592912 - 24592858
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtctg 209  Q
    ||||||||||||||| ||| |||||||||| || ||||||||||||||||||||||    
T  24592912 tcctcgtgaacttagctcagttggtagggacaa-tgcataatatatgcaaggtctg 24592858  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 26999105 - 26999159
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtctg 209  Q
    ||||||||||||||||||| ||||||| || || ||||||||||||||||||||||    
T  26999105 tcctcgtgaacttagttcagttggtagagacaa-tgcataatatatgcaaggtctg 26999159  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 32854535 - 32854580
Alignment:
Q  160 tgaacttagttcaattggtagggagaaatgcataatatatgcaagg 205  Q
    |||||||||||||||||||||||| ||||||||  |||||||||||    
T  32854535 tgaacttagttcaattggtagggataaatgcattttatatgcaagg 32854580  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 40262352 - 40262393
Alignment:
Q  51 aaactcatgtttggcttctaaaaaagtgatgccaaacacata 92  Q
    ||||||| |||||||| |||||||||||||||||||||||||    
T  40262352 aaactcaggtttggctactaaaaaagtgatgccaaacacata 40262393  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 16310823 - 16310874
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggt 206  Q
    |||||||||||||| ||||||||||| ||| |||||||||| |||||||||||    
T  16310823 tcctcgtgaacttaattcaattggta-ggaaaaatgcataaaatatgcaaggt 16310874  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 11931600 - 11931649
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaag 204  Q
    ||||||||| ||||||| ||||||||||||  |||||||||||||||||||    
T  11931600 tcctcgtgagcttagtttaattggtaggga-caatgcataatatatgcaag 11931649  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 20455886 - 20455938
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    ||||||||| ||||| |||||||||| ||| || ||||||||||||||||||||    
T  20455886 tcctcgtgagcttagctcaattggtatggacaa-tgcataatatatgcaaggtc 20455938  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 29544622 - 29544674
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    |||| |||| ||||| |||||||||||||| || ||||||||||||||||||||    
T  29544622 tcctagtgagcttagctcaattggtagggacaa-tgcataatatatgcaaggtc 29544674  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 30089044 - 30089096
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    ||||||||||||||| ||| ||||||||||  |||||||||||||| |||||||    
T  30089044 tcctcgtgaacttagctcagttggtaggga-caatgcataatatatacaaggtc 30089096  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 30125648 - 30125700
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    ||||||||||||||| ||| ||||||||||  |||||||||||||| |||||||    
T  30125648 tcctcgtgaacttagctcagttggtaggga-caatgcataatatatacaaggtc 30125700  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 11560493 - 11560544
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggt 206  Q
    ||||| ||| ||||| |||||||||||||| || |||||||||||||||||||    
T  11560493 tcctcatgagcttagctcaattggtagggacaa-tgcataatatatgcaaggt 11560544  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 6489002 - 6489056
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtctg 209  Q
    ||||||||| ||||| ||| |||||||||| || ||||||||||||||||||||||    
T  6489002 tcctcgtgagcttagctcagttggtagggacaa-tgcataatatatgcaaggtctg 6489056  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 15889406 - 15889459
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtct 208  Q
    ||||||||| ||||| ||| |||||||||| || |||||||||||||||||||||    
T  15889406 tcctcgtgagcttagctcagttggtagggacaa-tgcataatatatgcaaggtct 15889459  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 200
Target Start/End: Complemental strand, 6734806 - 6734765
Alignment:
Q  159 gtgaacttagttcaattggtagggagaaatgcataatatatg 200  Q
    |||||||||| ||| |||||||||| ||||||||||||||||    
T  6734806 gtgaacttagctcagttggtagggacaaatgcataatatatg 6734765  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 19759924 - 19759976
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    ||||||||| ||||| |||||||||||| | || ||||||||||||||||||||    
T  19759924 tcctcgtgagcttagctcaattggtaggtacaa-tgcataatatatgcaaggtc 19759976  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 21139195 - 21139162
Alignment:
Q  174 ttggtagggagaaatgcataatatatgcaaggtc 207  Q
    |||||||||| |||||||||||||||||||||||    
T  21139195 ttggtagggacaaatgcataatatatgcaaggtc 21139162  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 41417760 - 41417807
Alignment:
Q  156 ctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaag 204  Q
    ||||||||||||||||| ||||||||||  |||| ||||||||||||||    
T  41417760 ctcgtgaacttagttcagttggtaggga-taatgtataatatatgcaag 41417807  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 28131000 - 28130946
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtctg 209  Q
    ||||||||| |||||||||| ||||| ||| || ||||||||||||||||||||||    
T  28131000 tcctcgtgagcttagttcaaatggtaaggacaa-tgcataatatatgcaaggtctg 28130946  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 24120487 - 24120437
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaag 204  Q
    ||||||||| ||||| ||| ||||||| || ||||||||||||||||||||    
T  24120487 tcctcgtgagcttagctcagttggtagagacaaatgcataatatatgcaag 24120437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 18870791 - 18870739
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    ||||||||| ||||| ||| |||||||||| || ||||||||||||||||||||    
T  18870791 tcctcgtgagcttagctcagttggtagggacaa-tgcataatatatgcaaggtc 18870739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Original strand, 18554724 - 18554776
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggt 206  Q
    ||||||||| ||||  ||| |||||||||| |||||||||||||||| |||||    
T  18554724 tcctcgtgagcttaactcagttggtagggacaaatgcataatatatggaaggt 18554776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 35347359 - 35347307
Alignment:
Q  157 tcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtctg 209  Q
    |||||| ||||| ||| ||| || ||| |||||||||||||||||||||||||    
T  35347359 tcgtgagcttagctcagttgctatggacaaatgcataatatatgcaaggtctg 35347307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 52455044 - 52454992
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggt 206  Q
    |||| |||||||||| |||||||||| | | ||||||||||||||| ||||||    
T  52455044 tccttgtgaacttagctcaattggtaagaaaaaatgcataatatatacaaggt 52454992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 3830063 - 3830115
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    ||||||||||||||| ||| || ||||||| || ||||||||||||||||||||    
T  3830063 tcctcgtgaacttagctcagtttgtagggacaa-tgcataatatatgcaaggtc 3830115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 35224113 - 35224165
Alignment:
Q  154 tcctcgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggtc 207  Q
    ||||||||||||||||||| ||||| ||||  ||||||||| ||||||||||||    
T  35224113 tcctcgtgaacttagttcagttggttggga-caatgcataaaatatgcaaggtc 35224165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 2962788 - 2962741
Alignment:
Q  158 cgtgaacttagttcaattggtagggagaaatgcataatatatgcaaggt 206  Q
    ||||||||||||||||||||||  ||  |||||||||||||||||||||    
T  2962788 cgtgaacttagttcaattggtaaaga-taatgcataatatatgcaaggt 2962741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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