View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11595_low_3 (Length: 572)
Name: NF11595_low_3
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_low_3 |
 | |
|
| [»] scaffold0532 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 14 - 558
Target Start/End: Complemental strand, 9584953 - 9584409
Alignment:
| Q |
14 |
aggatcggaattaaggatggttgctttgacatggctatactgctcattgtcaaggcttccaaggaagagatgaagtcgctgttcttcttctctccgcatc |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9584953 |
aggatcagaattaaggatggttgctttgacatggctatactgctcattgtcaaggcttccaaggaagagatgaagtcgctgttcttcttctctccgcatc |
9584854 |
T |
|
| Q |
114 |
aattcctttgatgcgccacatgtgcattatggtagtggctgaagctcacatagttcatcgaaaagacctttgaatttcgtgtagaattttgtgacactga |
213 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
9584853 |
aattcctttgatgcgccacgtgtgcattatggtagtggctgaagctcacttagttcatcgaaaagacctttgaattttgtgtagaattctgtgacactga |
9584754 |
T |
|
| Q |
214 |
gatcaccttccttctgcattaagcagagcgtacgccatagttgatgaatccttggtgcattggtttgagcgaagtgctcttcgagatcgagccagatgtc |
313 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
9584753 |
gatcatcttccttctgcattaagcagagcgtatgccatagttgatgaatccttggtgcattggtttgagcgaagcgttcttcgagatcgagccagatgtc |
9584654 |
T |
|
| Q |
314 |
ccttgcgattgatgcatgtgaaatactgctatgcagtttctgatcagtggagttgatgatccatgccattgccattgaatctgctctctcccaattgaca |
413 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
9584653 |
ccttgcggttgatgcatgtgaaatattgctatgcagtttctgatcagtggagttgatgatccatgccgttaccattgaatccgctctctcccaattgaca |
9584554 |
T |
|
| Q |
414 |
taatctgttgatttcttccctggttttgagattgttccatcgatgaaaccgagcttcaattttgctcgaagtgctgttttcatcgatcgtgaccacgttc |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9584553 |
taatctgttgatttcttccctggttttgagattgttccgtcgatgaaaccgagcttcaattttgctcgaagtgctgttttcatcgatcgtgaccacgttc |
9584454 |
T |
|
| Q |
514 |
tgtagttttcgccagttagaactgccgcctccaatggagttcctg |
558 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9584453 |
tgtagttttcgccagttagaactgccgccaccaatggagttcctg |
9584409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 405
Target Start/End: Original strand, 6740110 - 6740248
Alignment:
| Q |
267 |
ggtgcattggtttgagcgaagtgctcttcgagatcgagccagatgtcccttgcgattgatgcatgtgaaatactgctatgcagtttctgatcagtggagt |
366 |
Q |
| |
|
|||||||| | |||||| || ||||||||||||| ||||||| ||| || ||| | | |||||| || |||||| || ||||||||||| || | || |
|
|
| T |
6740110 |
ggtgcatttgcttgagcaaaacgctcttcgagatccagccagacgtctctcgcggtggttgcatgcgagatactgtcgtgaagtttctgatccgtcgcgt |
6740209 |
T |
|
| Q |
367 |
tgatgatccatgccattgccattgaatctgctctctccc |
405 |
Q |
| |
|
| |||||||||||||| |||| || || |||||||||| |
|
|
| T |
6740210 |
ttatgatccatgccatcaccatggagtccgctctctccc |
6740248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0532 (Bit Score: 184; Significance: 3e-99; HSPs: 2)
Name: scaffold0532
Description:
Target: scaffold0532; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 15 - 558
Target Start/End: Original strand, 2235 - 2778
Alignment:
| Q |
15 |
ggatcggaattaaggatggttgctttgacatggctatactgctcattgtcaaggcttccaaggaagagatgaagtcgctgttcttcttctctccgcatca |
114 |
Q |
| |
|
||||| |||||||| |||||||| || ||||| || || || ||||||||||| |||||||| ||||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
2235 |
ggatcagaattaagaatggttgccttaacatgactgtattgttcattgtcaagacttccaagaaagaggtgaagtcgttgttcttcttctctctgcatca |
2334 |
T |
|
| Q |
115 |
attcctttgatgcgccacatgtgcattatggtagtggctgaagctcacatagttcatcgaaaagacctttgaatttcgtgtagaattttgtgacactgag |
214 |
Q |
| |
|
||||||||||||| ||||| ||||||| || ||||| || |||||| |||||||| || ||| ||||||| || ||||| |||| || ||||| || |
|
|
| T |
2335 |
attcctttgatgcaccacaagtgcattcaggaagtggttggagctcattaagttcatcaaagagaactttgaacttggtgtaaaattcagtcacacttag |
2434 |
T |
|
| Q |
215 |
atcaccttccttctgcattaagcagagcgtacgccatagttgatgaatccttggtgcattggtttgagcgaagtgctcttcgagatcgagccagatgtcc |
314 |
Q |
| |
|
||| | ||||||||||||||||||| || ||||||| |||||||||||| |||||||||| || || ||| ||||||||||||| |||||||| ||| |
|
|
| T |
2435 |
atcttcctccttctgcattaagcagatagtgcgccataattgatgaatcctgagtgcattggtctgtgcaaagcgctcttcgagatcaagccagatttcc |
2534 |
T |
|
| Q |
315 |
cttgcgattgatgcatgtgaaatactgctatgcagtttctgatcagtggagttgatgatccatgccattgccattgaatctgctctctcccaattgacat |
414 |
Q |
| |
|
|| || |||||||||| ||||||||| |||||||||||| ||||||||| || |||||||||||||| ||||||| |||||||||||||| ||| | |
|
|
| T |
2535 |
ctcgccgttgatgcatgagaaatactgatatgcagtttctcatcagtggaatttatgatccatgccatcaccattgagtctgctctctcccagttggtgt |
2634 |
T |
|
| Q |
415 |
aatctgttgatttcttccctggttttgagattgttccatcgatgaaaccgagcttcaattttgctcgaagtgctgttttcatcgatcgtgaccacgttct |
514 |
Q |
| |
|
||| |||| ||||| || |||| | ||||||||||| | |||||| || |||| |||||||||||| || || ||||| ||||||||||| ||||| |
|
|
| T |
2635 |
aatttgttatcttctttcccagtttcgttattgttccatcaacgaaaccaagtttcatttttgctcgaagcgcggtcttcattgatcgtgaccatgttct |
2734 |
T |
|
| Q |
515 |
gtagttttcgccagttagaactgccgcctccaatggagttcctg |
558 |
Q |
| |
|
|||||||||||| | ||||| ||| || | ||||||||||||| |
|
|
| T |
2735 |
gtagttttcgccgttgagaacagccaccactaatggagttcctg |
2778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0532; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 15 - 558
Target Start/End: Original strand, 8440 - 8983
Alignment:
| Q |
15 |
ggatcggaattaaggatggttgctttgacatggctatactgctcattgtcaaggcttccaaggaagagatgaagtcgctgttcttcttctctccgcatca |
114 |
Q |
| |
|
||||| |||||||| |||||||| || ||||| || || || ||||||||||| |||||||| ||||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
8440 |
ggatcagaattaagaatggttgccttaacatgactgtattgttcattgtcaagacttccaagaaagaggtgaagtcgttgttcttcttctctctgcatca |
8539 |
T |
|
| Q |
115 |
attcctttgatgcgccacatgtgcattatggtagtggctgaagctcacatagttcatcgaaaagacctttgaatttcgtgtagaattttgtgacactgag |
214 |
Q |
| |
|
||||||||||||| ||||| ||||||| || ||||| || |||||| |||||||| | ||| ||||||| || ||||| |||| || ||||| || |
|
|
| T |
8540 |
attcctttgatgcaccacaagtgcattcaggaagtggttggagctcattaagttcatcatagagagctttgaacttggtgtaaaattcagtcacacttag |
8639 |
T |
|
| Q |
215 |
atcaccttccttctgcattaagcagagcgtacgccatagttgatgaatccttggtgcattggtttgagcgaagtgctcttcgagatcgagccagatgtcc |
314 |
Q |
| |
|
||| | ||||||||||||||||||| ||| ||||||| |||||| ||||| |||||||||| || || ||| ||||||||||||| |||||||| ||| |
|
|
| T |
8640 |
atcttcctccttctgcattaagcagatcgtgcgccataattgatggatcctgtgtgcattggtctgtgcaaagcgctcttcgagatcaagccagatttcc |
8739 |
T |
|
| Q |
315 |
cttgcgattgatgcatgtgaaatactgctatgcagtttctgatcagtggagttgatgatccatgccattgccattgaatctgctctctcccaattgacat |
414 |
Q |
| |
|
|| || |||||||||| ||||||||| |||||||||||| ||||||||| || |||||||||||||| ||||||| |||||||||||||| ||| | |
|
|
| T |
8740 |
ctcgccgttgatgcatgagaaatactgttatgcagtttctcatcagtggaatttatgatccatgccatcaccattgagtctgctctctcccagttggtgt |
8839 |
T |
|
| Q |
415 |
aatctgttgatttcttccctggttttgagattgttccatcgatgaaaccgagcttcaattttgctcgaagtgctgttttcatcgatcgtgaccacgttct |
514 |
Q |
| |
|
||| |||| ||||| || |||| | ||||||||||| | |||||| || |||| |||||||||||| || || ||||| ||||||||||| ||||| |
|
|
| T |
8840 |
aatttgttatcttctttcccagtttcgttattgttccatcaacgaaaccaagtttcatttttgctcgaagcgcggtcttcattgatcgtgaccatgttct |
8939 |
T |
|
| Q |
515 |
gtagttttcgccagttagaactgccgcctccaatggagttcctg |
558 |
Q |
| |
|
|||||||||||| | ||||| ||| || | ||||||||||||| |
|
|
| T |
8940 |
gtagttttcgccgttgagaacagccaccactaatggagttcctg |
8983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 4e-95; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 246 - 558
Target Start/End: Original strand, 33797533 - 33797845
Alignment:
| Q |
246 |
cgccatagttgatgaatccttggtgcattggtttgagcgaagtgctcttcgagatcgagccagatgtcccttgcgattgatgcatgtgaaatactgctat |
345 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||||||| | ||||||| |||||||| ||||||| |
|
|
| T |
33797533 |
cgccataattgatggatccttggtgcgttggtttgagcaaaacgctcttcgagatcgagccagatgtccctcgttgttgatgcgtgtgaaatgctgctat |
33797632 |
T |
|
| Q |
346 |
gcagtttctgatcagtggagttgatgatccatgccattgccattgaatctgctctctcccaattgacataatctgttgatttcttccctggttttgagat |
445 |
Q |
| |
|
||||| | ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||| |||||||||| | ||| |
|
|
| T |
33797633 |
gcagtaccggatcagtggcattgatgatccatgctgttaccattgaatctgctctctcccaattgacataattggttgttttcatccctggtttcgtgat |
33797732 |
T |
|
| Q |
446 |
tgttccatcgatgaaaccgagcttcaattttgctcgaagtgctgttttcatcgatcgtgaccacgttctgtagttttcgccagttagaactgccgcctcc |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| | |
|
|
| T |
33797733 |
tgttccatcgatgaaaccgagcttcaattttgctcggagcgccgttttcatcgatcgtgaccacgttctgtagttttctccatttagaacagccgccact |
33797832 |
T |
|
| Q |
546 |
aatggagttcctg |
558 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33797833 |
aatggagttcctg |
33797845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 246 - 558
Target Start/End: Original strand, 33724069 - 33724381
Alignment:
| Q |
246 |
cgccatagttgatgaatccttggtgcattggtttgagcgaagtgctcttcgagatcgagccagatgtcccttgcgattgatgcatgtgaaatactgctat |
345 |
Q |
| |
|
||||||| |||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||||| || ||||||| |||||||| ||||||| |
|
|
| T |
33724069 |
cgccataattgatggatccttggtgtgttggtttgagcaaaacgctcttcgagatcgagccagatgtccctcgctgttgatgcgtgtgaaatgctgctat |
33724168 |
T |
|
| Q |
346 |
gcagtttctgatcagtggagttgatgatccatgccattgccattgaatctgctctctcccaattgacataatctgttgatttcttccctggttttgagat |
445 |
Q |
| |
|
||||| | ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||| |||||||||| | ||| |
|
|
| T |
33724169 |
gcagtaccggatcagtggcattgatgatccatgctgttaccattgaatctgctctctcccaattgacataattggttgttttcatccctggtttcgtgat |
33724268 |
T |
|
| Q |
446 |
tgttccatcgatgaaaccgagcttcaattttgctcgaagtgctgttttcatcgatcgtgaccacgttctgtagttttcgccagttagaactgccgcctcc |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| | |
|
|
| T |
33724269 |
tgttccatcgatgaaaccgagcttcaattttgcttggagcgccgttttcatcgatcgtgaccacgttctgtagttttctccatttagaacagccgccact |
33724368 |
T |
|
| Q |
546 |
aatggagttcctg |
558 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33724369 |
aatggagttcctg |
33724381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 33723892 - 33723964
Alignment:
| Q |
69 |
cttccaaggaagagatgaagtcgctgttcttcttctctccgcatcaattcctttgatgcgccacatgtgcatt |
141 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||| | |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
33723892 |
cttccaaggaaaagatggagacgttgttcttcttccattcgcatcaattcctttgatgctccacaagtgcatt |
33723964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 33797356 - 33797428
Alignment:
| Q |
69 |
cttccaaggaagagatgaagtcgctgttcttcttctctccgcatcaattcctttgatgcgccacatgtgcatt |
141 |
Q |
| |
|
||||||||||| ||||| || | ||||||||||| || |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
33797356 |
cttccaaggaaaagatggagacattgttcttcttcccttcgcatcaattcctttgatgctccacaagtgcatt |
33797428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 406
Target Start/End: Original strand, 52081705 - 52081844
Alignment:
| Q |
267 |
ggtgcattggtttgagcgaagtgctcttcgagatcgagccagatgtcccttgcgattgatgcatgtgaaatactgctatgcagtttctgatcagtggagt |
366 |
Q |
| |
|
|||||||| | |||||| || ||||||||||||| ||||||| ||| || ||| | | |||||| || |||||| || ||||||||||| || | || |
|
|
| T |
52081705 |
ggtgcatttgcttgagcaaaacgctcttcgagatccagccagaagtctctcgcggtggttgcatgcgagatactgacgtgaagtttctgatccgtcgcgt |
52081804 |
T |
|
| Q |
367 |
tgatgatccatgccattgccattgaatctgctctctccca |
406 |
Q |
| |
|
| |||||||||||||| |||| || || ||||||||||| |
|
|
| T |
52081805 |
ttatgatccatgccatcaccatggagtccgctctctccca |
52081844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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