View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11595_low_4 (Length: 550)
Name: NF11595_low_4
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 423
Target Start/End: Original strand, 6400696 - 6401111
Alignment:
| Q |
15 |
ggcaaggcatatcagtattgcatacatgtgactgggatcaaacatatatggcatatgctnnnnnnnnngattagaaggtgagccatgaaacgaaaaaatc |
114 |
Q |
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| T |
6400696 |
ggcaaggcatatcagtattgcatacatgtgactgggatcatacatatatggcatatgctaaaaacaa-gattagaaggtgagccatgaaacgaaaaaatc |
6400794 |
T |
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| Q |
115 |
ctagacctttcaactacacatgcatgcacnnnnnnnnn------ccttctttagttagacaacaattcaaga---taaaatactaactaactaaacatgc |
205 |
Q |
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| T |
6400795 |
ctagacctttcaactacacatgcatgcacaaaaaaaaaaaaaaaccttctttagttagacaacaattcaagaagataaaatacgaactaactaaacatgc |
6400894 |
T |
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| Q |
206 |
actacatgtcatgtattcataagttcaacataatcttctttgattaccaagggcgcacgttctgtaagttatataaatataagactgactaagatttaaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| |
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| T |
6400895 |
actacatgtcatgtattcataagttcaacataatcttctttgattaccaagggcgcacgttccgtt-gttatataaatataagactgactaatatttaaa |
6400993 |
T |
|
| Q |
306 |
gagaagttgtatatggatatacaatcgacatattctgttatgataaaaggaaaaaagttacaaatttcacagagaaataaacctacataactatcagcta |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6400994 |
gagaagttgtatatggatatacaatcgacatattctgttatgacaaaaggaaaaaagttacaaatttcacagagaaataaacctacataactatcagtta |
6401093 |
T |
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| Q |
406 |
tcaaacttcgggtgattt |
423 |
Q |
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||||||||||||| |||| |
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| T |
6401094 |
tcaaacttcgggtaattt |
6401111 |
T |
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