View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11595_low_5 (Length: 540)
Name: NF11595_low_5
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_low_5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 227 - 540
Target Start/End: Original strand, 2458332 - 2458651
Alignment:
| Q |
227 |
tagacgcacacatataactttcaaactaattaatgccatctgttttaaaaattgtggtatttattatttttgtctaaagaggaattctgatggctccact |
326 |
Q |
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| T |
2458332 |
tagacacacacatataacttccaaactaattaatgtcatctattttaaaaattatggtatttattttttttgtctaaagaggaattctgatggctccact |
2458431 |
T |
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| Q |
327 |
ttgtgttacacaacacgattagttgctaagggattccatcaacgt--------cgactataaggacaaatttagccttgttgtcaaacaaaatggtgtta |
418 |
Q |
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| T |
2458432 |
ttgtattacacaacacgattagttgctaagggattccatcaacgttctggtatcgactataaggaccaatttagccttgttgtcaaacaaaatggtgtta |
2458531 |
T |
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| Q |
419 |
tgcatttctatttcttctcaatgaaacttttaatgaagaagtatatatgtgtcaaccacctgtttttgtgtatcaaatatacatacgatctaattatgtt |
518 |
Q |
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| T |
2458532 |
tgcatttctatttcttctcaatgaaacttttaatgaagaagtatatatgtctcaaccacctgtttttgtgtatcaaatatacatac--tctaattatatt |
2458629 |
T |
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| Q |
519 |
tgcatgcttcaaaggtctcttt |
540 |
Q |
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| T |
2458630 |
tgcatgcttcaaaagtctcttt |
2458651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 2458214 - 2458269
Alignment:
| Q |
111 |
ccaggaaaaatgagttcccgactcattacgatcatgatgatatatacttctcaaat |
166 |
Q |
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| T |
2458214 |
ccaggaaaaatgagttcccgactcattacgatcatgatgatatatacttctcaaat |
2458269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 2458121 - 2458157
Alignment:
| Q |
16 |
caactatgttggtcaaaagccatactaagtgcatcat |
52 |
Q |
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| T |
2458121 |
caactatgttggtcaaaagccatactaagtgcatcat |
2458157 |
T |
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