View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11595_low_8 (Length: 456)
Name: NF11595_low_8
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 444
Target Start/End: Complemental strand, 17745224 - 17744797
Alignment:
| Q |
17 |
acaaagatatctacttacaaaaacaagaaaaggtttctccttacaaaatgcaacttcaacaagtagagaatccaaggaaaacattggaagtgtttggttc |
116 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17745224 |
acaaagatgtctacttgcaaaaacaagaaaaggtttctccttacaaaatgcaacttcaacaagtagataatccaaggaaaacattggaagtgtttggttc |
17745125 |
T |
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| Q |
117 |
accaatattagatgaaagatgcaagtcaataagctttgatatgaggctaaaaataccatcttgggaagctgctactaaacttgaagaacaagaaattgat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
17745124 |
accaatattagatgaaagatgcaagtcaataagctttgatatgagactaaaaataccatcttgggaagctgcttcaaaacttgaagaacaagaaattgat |
17745025 |
T |
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| Q |
217 |
ttttctacaaattgnnnnnnnnnnnnnnnnnnnnttggaagtgatgcaagttcagatttatttgagattgaaagtttcactggtaataaaacaagctcat |
316 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17745024 |
ttttctacaaattgtgatgatgatgatgatgatgttggaagtgatgcaagttcagatttatttgagattgaaagcttcactggtaataaaacaagctcat |
17744925 |
T |
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| Q |
317 |
ttttatcaagaacaacaacatcacatgttgcttctggttgcactagtccaaatttttatgcaccaagtgaagcaagcattgaatggagtgtggtaactgc |
416 |
Q |
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| T |
17744924 |
ttttatcaagaacaacaacatcacatgttgcttctggttgcactagtccaaatttttatgcaccaagtgaagcaagcattgaatggagtgtggtaactgc |
17744825 |
T |
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| Q |
417 |
aagtgcagttgattattcagctgtttca |
444 |
Q |
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| T |
17744824 |
aagtgcagttgattattcagctgtttca |
17744797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 24336875 - 24336907
Alignment:
| Q |
255 |
aagtgatgcaagttcagatttatttgagattga |
287 |
Q |
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| T |
24336875 |
aagtgatgcaagttcagatttatttgagattga |
24336907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 24337002 - 24337042
Alignment:
| Q |
382 |
agtgaagcaagcattgaatggagtgtggtaactgcaagtgc |
422 |
Q |
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| T |
24337002 |
agtgaggcaagcatagaatggagtgtggtaactgcaagtgc |
24337042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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