View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11595_low_9 (Length: 447)
Name: NF11595_low_9
Description: NF11595
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11595_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 222 - 440
Target Start/End: Original strand, 32534714 - 32534932
Alignment:
| Q |
222 |
agatcagatgactgctatggaccggaaaaattatttaacgccgtcaattcaaatcctatagaaagatatgaaagaaagtattcaaaaatataattttgtt |
321 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32534714 |
agatcagatgactgctatggaccggaaaaattatttaacgccgtcaattcaaatcctatagaaagatatgaaagaaagtattcaaaaatataattttgtt |
32534813 |
T |
|
| Q |
322 |
gagttcttgcatgagatcatgatttcaagatgcttttctttctattgtaatgacatctctttctcttactccaagtttgtttggactaagttcatatcag |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
32534814 |
gagttcttgcatgagatcatgatttcaagatgcttttctttctattgtaatgacgtctctttctcttactctaagtttgtttgcactaagttcatatcag |
32534913 |
T |
|
| Q |
422 |
attttaactcttcatctct |
440 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
32534914 |
attttaactcttcatctct |
32534932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 32534471 - 32534688
Alignment:
| Q |
11 |
caaagggaagagcatcttgaaattcttcaacgactatggtgaattgcgctgagaattagcgacaaagatggtgtagtcccgattgaacaaagtttaggag |
110 |
Q |
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|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
32534471 |
caaagggaaaagcatcttgaaattcttcaacgactatggtgaattgcgctgagaattagcgacaaagatggtgaagtcc-gattgaacaaagtttaggag |
32534569 |
T |
|
| Q |
111 |
ctcatggggaatgagttcattcgtgatggttcacattagcacaattgaggccactgcagataaaagtggcttgatgctatcgaacattgttgagatcatt |
210 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32534570 |
ctcatggggaatgagttcattcgtgatggtttacattagcacaattgaggctactgcagataaaagtggcttgatgctatcaaacattgttgagatcatt |
32534669 |
T |
|
| Q |
211 |
gtcgttgatgaagatcaga |
229 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
32534670 |
gtcgttgatgaagatcaga |
32534688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 26 - 229
Target Start/End: Original strand, 32111879 - 32112082
Alignment:
| Q |
26 |
cttgaaattcttcaacgactatggtgaattgcgctgagaattagcgacaaagatggtgtagtcccgattgaacaaagtttaggagctcatggggaatgag |
125 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || ||||| |||| ||| |||||| ||||||||||||||||||||||||| ||| | |||||||| |
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|
| T |
32111879 |
cttgaaattcttcaatgactatggtgaattgtgcgttgaattggcgaaaaacatggtgaagtcccgattgaacaaagtttaggacttcacgaggaatgag |
32111978 |
T |
|
| Q |
126 |
ttcattcgtgatggttcacattagcacaattgaggccactgcagataaaagtggcttgatgctatcgaacattgttgagatcattgtcgttgatgaagat |
225 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||| ||||||||||| |
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|
| T |
32111979 |
ttcattcgtgacagttcgcattagcgcaattgaggccactgcagataaaactggcttgctgctatcaaacattgttgagatcactgtcattgatgaagat |
32112078 |
T |
|
| Q |
226 |
caga |
229 |
Q |
| |
|
|||| |
|
|
| T |
32112079 |
caga |
32112082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 26 - 224
Target Start/End: Original strand, 32119922 - 32120120
Alignment:
| Q |
26 |
cttgaaattcttcaacgactatggtgaattgcgctgagaattagcgacaaagatggtgtagtcccgattgaacaaagtttaggagctcatggggaatgag |
125 |
Q |
| |
|
||||||||||||||||||||| ||||||| | | | | ||| || | |||||||| |||||||||||||||||||||||||| ||| | |||||||| |
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|
| T |
32119922 |
cttgaaattcttcaacgactacggtgaatcgtgtgggggattggcaaaaaagatggctaagtcccgattgaacaaagtttaggagttcacgaggaatgag |
32120021 |
T |
|
| Q |
126 |
ttcattcgtgatggttcacattagcacaattgaggccactgcagataaaagtggcttgatgctatcgaacattgttgagatcattgtcgttgatgaaga |
224 |
Q |
| |
|
|||||||| || ||| |||||||| ||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
32120022 |
ttcattcgcgaccgtttgcattagcataattgaggccactgcagataaaactggcttgctgctatcaaacattgttgagatcattgtcgttgatgaaga |
32120120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 32205274 - 32205096
Alignment:
| Q |
26 |
cttgaaattcttcaacgactatggtgaattgcgctgagaattagcgacaaagatggtgtagtcccgattgaacaaagtttaggagctcatggggaatgag |
125 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||| |||||||| |||||| ||||||||||| ||||||||||||| ||||| ||||||| |
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|
| T |
32205274 |
cttgaaattcttcaataactatggtaaattgcgctgagaattggcgacaaaaatggtgaagtcccgattgtacaaagtttaggatttcatgaggaatgac |
32205175 |
T |
|
| Q |
126 |
ttcattcgtgatggttcacattagcacaattgaggccactgcagataaaagtggcttgatgctatcgaacattgttgagatc |
207 |
Q |
| |
|
|||||| |||||| ||| || ||||||||| ||||||| ||| |||||||||| || ||||||| |||||||||| |||| |
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|
| T |
32205174 |
ttcatttgtgatgtttcgcactagcacaatagaggccattgccgataaaagtgtct---tgctatcaaacattgttgcgatc |
32205096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 26 - 207
Target Start/End: Original strand, 32159285 - 32159463
Alignment:
| Q |
26 |
cttgaaattcttcaacgactatggtgaattgcgctgagaattagcgacaaagatggtgtagtcccgattgaacaaagtttaggagctcatggggaatgag |
125 |
Q |
| |
|
||||||||||||||| || |||||||||||| || ||| ||| |||| |||||||||| | ||| | ||||| ||| | |||||||||||| |||||||| |
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|
| T |
32159285 |
cttgaaattcttcaatgagtatggtgaattgtgcggaggattggcgaaaaagatggtgaattccagcttgaaaaaattgtaggagctcatgaggaatgag |
32159384 |
T |
|
| Q |
126 |
ttcattcgtgatggttcacattagcacaattgaggccactgcagataaaagtggcttgatgctatcgaacattgttgagatc |
207 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||| |||||| | |||||||| || |||||||||||||||||||| |
|
|
| T |
32159385 |
ctcattcgtgatggttcgcatgaacacaattgaggccattgcagacacaagtggct---tggtatcgaacattgttgagatc |
32159463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 32 - 229
Target Start/End: Original strand, 32178706 - 32178900
Alignment:
| Q |
32 |
attcttcaacgactatggtgaattgcgctgagaattagcgacaaagatggtgtagtcccgattgaacaaagtttaggagctcatggggaatgagttcatt |
131 |
Q |
| |
|
||||||||| |||||||||||||||||| ||| ||| |||| ||||||| | ||||| | ||||| ||||| |||||||||||| |||||||| ||||| |
|
|
| T |
32178706 |
attcttcaatgactatggtgaattgcgcggaggattggcgaaaaagatgatcaagtccagcttgaaaaaagtgtaggagctcatgaggaatgagctcatt |
32178805 |
T |
|
| Q |
132 |
cgtgatggttcacattagcacaattgaggccactgcagataaaagtggcttgatgctatcgaacattgttgagatcattgtcgttgatgaagatcaga |
229 |
Q |
| |
|
| ||||||||| ||||| ||||||||||||| |||||| | |||||||| | |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
32178806 |
catgatggttcgtattagtacaattgaggccattgcagacacaagtggct---tcgtatcgaacattgttgagatctcgatcgttgatgaagatcaga |
32178900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 32175565 - 32175722
Alignment:
| Q |
26 |
cttgaaattcttcaacgactatggtgaattgcgctgagaattagcgacaaagatggtgtagtcccgattgaacaaagtttaggagctcatggggaatgag |
125 |
Q |
| |
|
||||||||||||||| || |||||||||||| || ||| ||| |||| |||||||||| ||||| | ||||| || || |||||||||||| ||||| || |
|
|
| T |
32175565 |
cttgaaattcttcaatgattatggtgaattgtgcggaggattggcgaaaaagatggtgaagtccagcttgaaaaatgtgtaggagctcatgaggaataag |
32175664 |
T |
|
| Q |
126 |
ttcattcgtgatggttcacattagcacaattgaggccactgcagataaaagtggcttg |
183 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
32175665 |
ctcatttgtgatggttcgcattagcacaattgaggccattgcagacacaagtggcttg |
32175722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 229
Target Start/End: Original strand, 32183672 - 32183771
Alignment:
| Q |
127 |
tcattcgtgatggttcacattagcacaattgaggccactgcagataaaagtggcttgatgctatcgaacattgttgagatcattgtcgttgatgaagatc |
226 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||| | |||||||| || |||||||||||||||||||| || |||||||||||| |
|
|
| T |
32183672 |
tcattcgtgatggttcgcattagcataattgaggccattgcagacacaagtggct---tggtatcgaacattgttgagatctcgatcattgatgaagatc |
32183768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 175
Target Start/End: Complemental strand, 32210995 - 32210857
Alignment:
| Q |
26 |
cttgaaattcttcaacgactatggtgaattgcgctgagaattagcgacaaagatggtgtagtcccgattgaacaaagtttaggagctcatggggaatgag |
125 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||| | || ||| ||||| || ||||||||||||| |||||| |||| || |
|
|
| T |
32210995 |
cttgaaattcttcaatgactatggtaaattgcgctgagaattggtgaaaaacatggt-----------tgtacaaagtttaggatctcatgaggaacgac |
32210907 |
T |
|
| Q |
126 |
ttcattcgtgatggttcacattagcacaattgaggccactgcagataaaa |
175 |
Q |
| |
|
||| ||||||||| ||| || ||||||||| ||||||| ||| ||||||| |
|
|
| T |
32210906 |
ttctttcgtgatgtttcgcactagcacaatagaggccattgccgataaaa |
32210857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 32183586 - 32183675
Alignment:
| Q |
26 |
cttgaaattcttcaacgactatggtgaattgcgctgagaattagcgacaaagatggtgtagtcccgattgaacaaagtttaggagctcat |
115 |
Q |
| |
|
||||||||||||||| || ||||||||| || || ||| ||| |||| |||||||||| ||||| | ||||| ||| | ||||||||||| |
|
|
| T |
32183586 |
cttgaaattcttcaatgattatggtgaactgtgcggaggattggcgaaaaagatggtgaagtccagcttgaaaaaattgtaggagctcat |
32183675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 361
Target Start/End: Original strand, 32112108 - 32112246
Alignment:
| Q |
222 |
agatcagatgactgctatggaccggaaaaattatttaacgccgtcaattcaaatcctatagaaagatatgaaa-gaaagtatt-caaaaatataattttg |
319 |
Q |
| |
|
||||||| |||||||||||||| ||||| |||||||| | || ||||| ||||||| ||| |||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
32112108 |
agatcagctgactgctatggactggaaacgttatttaatgacggcaatttgaatcctacgaaaaaatatgaaaggaaagcattaaaaaaatataattttg |
32112207 |
T |
|
| Q |
320 |
ttgagttcttgcatgagatcatgatttcaagatgcttttctt |
361 |
Q |
| |
|
||||| | ||||| |||| || ||||||||||| ||||||| |
|
|
| T |
32112208 |
ttgagattttgcaagaga--at-atttcaagatgtttttctt |
32112246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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