View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11596_high_1 (Length: 776)
Name: NF11596_high_1
Description: NF11596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11596_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 655; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 21 - 766
Target Start/End: Original strand, 50228696 - 50229440
Alignment:
| Q |
21 |
actgttactataatatacctctcgctgctaaaaaactatattaagtattaacaatcatcccttcaatccaccaagaatgaaaatctacaacaaaaatcaa |
120 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50228696 |
actgttactataatatacctcccgctgctaaaaaactatattaagtattaacaatcatcccttcaatccaccaagaatgaaaatctacaacaaaaatcaa |
50228795 |
T |
|
| Q |
121 |
tctatgattgttcaaacactaccatgattggagtttgatacgatccaatagctgcttgaaagattcttatttcctacaaaaaattcttgaattatgttct |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50228796 |
tctatgattgttcaaacactaccatgattggagtttgatacgatccaatagctgcttgaaagattcttatttcctacaaaaaattcttgaattatgttct |
50228895 |
T |
|
| Q |
221 |
ttccaaataattcaaatacatgtcatccaaattgcctgaaaacacatacaaaattcctttctaaacaagtaagcaccacaaaattgtaaagcatgctctc |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50228896 |
ttccaaataattcaaatacatgtcatccaaattgcctgaaaacacatacaaaattcctttctaaacaagtaagcaccacaaaatt-taaagcatgctctc |
50228994 |
T |
|
| Q |
321 |
caatgtcaactgggttcacaaaacaatacccaaccaccgacaaacgccattccaaacattactaaaaacttcacaacctnnnnnnntatccttaattgtt |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50228995 |
caatgtcaactgggttcacaaaacaatacccaaccaccgacaaacgccattccaaacattactaaaaacttcacaacctaaaaaaatatccttaattgtt |
50229094 |
T |
|
| Q |
421 |
tcctccttcccaccccctcccgggcaaagcaaagaagtagcaggcaccactccacgttgaaaaaagaagatccttagtaggaatccttttgttcaagagc |
520 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50229095 |
tcctccttcccaccccctcccgggcaaagcaaagaagtagcaagcaccactccatgttgaaaaaagaagatccttagtaggaatccttttgttcaagagc |
50229194 |
T |
|
| Q |
521 |
ctccatatataatgatatcttcatagtttagttttgttccaaaccaaatgagnnnnnnntatctaagttgggttgatcacatgcttatgagtttgataag |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50229195 |
ctccatatataatgatatcttcatagtttagttttgttccaaaccaaatgagaaaaaaatatctaagttgggttgatcacatgcttatgagtttgataag |
50229294 |
T |
|
| Q |
621 |
catctttgactgaatatccgttagacagattaagtaaccaaagtcatcaatcaaccatgttaacctgtnnnnnnngccgcctcctaagtaaaaagacgcc |
720 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50229295 |
catctttgactgaatatccgttagacagactaagtaaccaaagtcatcaatcaaccatgttaacctgtaaaaaaagccgcctcctaagtaaaaagacgcc |
50229394 |
T |
|
| Q |
721 |
ttctccacctctgcacatccactccccaccctcacctatgcttctc |
766 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
50229395 |
ttctccacctctgcacatccactccccaccctcacctatgcatctc |
50229440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 260 - 482
Target Start/End: Original strand, 39380661 - 39380885
Alignment:
| Q |
260 |
aaacacatacaaaattcctttctaaacaagtaagcaccacaaaa-ttgtaaagcatgctctccaatgtcaactgggttcacaaaacaa-tacccaaccac |
357 |
Q |
| |
|
||||||||||||| | ||||||| |||| |||||||||||||| ||||| |||| |||||||| |||||| ||| ||| |||||||| |||||||||| |
|
|
| T |
39380661 |
aaacacatacaaattccctttctgaacatataagcaccacaaaaattgtagagcaagctctccattgtcaattggattctcaaaacaaatacccaaccat |
39380760 |
T |
|
| Q |
358 |
cgacaaacgccattccaaacattactaaaaacttcacaacctnnnnnnntatccttaattgtttcctccttcccaccccctcccgggcaaagcaaagaag |
457 |
Q |
| |
|
||| |||| ||||||||||||||||||||||| ||||| | | | ||| |||||||||||||||||| |||||| | |||| |||||||| |
|
|
| T |
39380761 |
cgaaaaacaccattccaaacattactaaaaacatcacatcttaattaaagacaattagttgtttcctccttcccacaccctcctgaacaaaacaaagaag |
39380860 |
T |
|
| Q |
458 |
tagcaggcaccactccacgttgaaa |
482 |
Q |
| |
|
|| |||||| ||||||||| ||||| |
|
|
| T |
39380861 |
tatcaggcaacactccacggtgaaa |
39380885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University