View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11596_high_12 (Length: 276)
Name: NF11596_high_12
Description: NF11596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11596_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 21776779 - 21777039
Alignment:
| Q |
1 |
tgagtggttatcttggtttgagtggagctatcatcactcaactatactatgccttttatggaaatgactcaaaatctttaattttgcttatggcttggtt |
100 |
Q |
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| T |
21776779 |
tgagtggttatcttggtttgagtggagctatcattactcaactatactacgccttttatggaaatgactcaaaatctttaattttgcttatggcttggtt |
21776878 |
T |
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| Q |
101 |
accaactgttgtaacttttgtttttacgccggttattaagcatcacaagagagttgaacaaccgaatgattccaaagctttctataattttctttacatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21776879 |
accaactgttgtaacttttgtttttacgccggttattaagcatcacatgagagttgaacaaccgaatgattccaaagctttctataattttctttacatg |
21776978 |
T |
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| Q |
201 |
acactaatccttgcagggtacctcatgataatgatcatagtacaaaaatgtttcaacttta |
261 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21776979 |
actttaatccttgcagggtacctcatgataatgatcatagtacaaaaatgtttcaacttta |
21777039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 19713621 - 19713361
Alignment:
| Q |
1 |
tgagtggttatcttggtttgagtggagctatcatcactcaactatactatgccttttatggaaatgactcaaaatctttaattttgcttatggcttggtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19713621 |
tgagtggttatcttggtttgagtggagctatcattactcaactatactatgccttctatggaaatgactctaaatctttaattttgcttatggcttggtt |
19713522 |
T |
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| Q |
101 |
accaactgttgtaacttttgtttttacgccggttattaagcatcacaagagagttgaacaaccgaatgattccaaagctttctataattttctttacatg |
200 |
Q |
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|||||||| ||||||||||||||||| ||| ||||||||||| || ||||||| ||||||||| ||||||||||||||||| |||||||| ||||||||| |
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| T |
19713521 |
accaactgctgtaacttttgtttttatgccagttattaagcaccataagagagctgaacaaccaaatgattccaaagctttttataatttcctttacatg |
19713422 |
T |
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| Q |
201 |
acactaatccttgcagggtacctcatgataatgatcatagtacaaaaatgtttcaacttta |
261 |
Q |
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| ||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||| |
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| T |
19713421 |
tctttaatccttgcagggttcctcatgataatgatcatagtgcaaacatgtttcaacttta |
19713361 |
T |
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