View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11596_high_4 (Length: 563)

Name: NF11596_high_4
Description: NF11596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11596_high_4
NF11596_high_4
[»] chr6 (18 HSPs)
chr6 (11-544)||(11643380-11643919)
chr6 (12-162)||(18494911-18495061)
chr6 (11-175)||(24798800-24798964)
chr6 (58-164)||(2216803-2216909)
chr6 (44-165)||(24798640-24798761)
chr6 (43-175)||(24690360-24690496)
chr6 (11-175)||(24690536-24690688)
chr6 (43-163)||(18494751-18494869)
chr6 (58-175)||(11643974-11644090)
chr6 (37-162)||(9955573-9955698)
chr6 (375-544)||(33553472-33553643)
chr6 (29-162)||(9954825-9954958)
chr6 (57-114)||(11643898-11643955)
chr6 (57-114)||(24690500-24690557)
chr6 (63-115)||(24798770-24798822)
chr6 (57-114)||(18494874-18494931)
chr6 (117-161)||(5693645-5693689)
chr6 (291-459)||(20385937-20386105)
[»] chr2 (25 HSPs)
chr2 (13-175)||(2916383-2916545)
chr2 (11-175)||(16973069-16973234)
chr2 (11-175)||(44594415-44594580)
chr2 (11-162)||(38982734-38982886)
chr2 (22-174)||(40987834-40987987)
chr2 (11-155)||(24126107-24126245)
chr2 (43-164)||(40987673-40987794)
chr2 (43-159)||(2916587-2916703)
chr2 (43-163)||(16973274-16973394)
chr2 (11-155)||(24125836-24125975)
chr2 (62-175)||(44594253-44594367)
chr2 (43-163)||(11533654-11533775)
chr2 (11-164)||(13559480-13559632)
chr2 (43-157)||(38982580-38982694)
chr2 (36-127)||(13559357-13559448)
chr2 (113-164)||(24125686-24125737)
chr2 (57-114)||(16973213-16973270)
chr2 (57-114)||(24125800-24125857)
chr2 (393-536)||(43924722-43924859)
chr2 (59-114)||(44594381-44594436)
chr2 (59-114)||(38982700-38982755)
chr2 (27-161)||(34826403-34826537)
chr2 (57-114)||(2916526-2916583)
chr2 (57-114)||(24126071-24126128)
chr2 (393-544)||(32121616-32121770)
[»] chr1 (19 HSPs)
chr1 (11-175)||(22683146-22683311)
chr1 (11-164)||(10824546-10824700)
chr1 (11-163)||(18844476-18844629)
chr1 (14-164)||(19056330-19056482)
chr1 (14-163)||(37189523-37189678)
chr1 (43-175)||(15825731-15825861)
chr1 (43-161)||(19056169-19056287)
chr1 (58-159)||(37189388-37189489)
chr1 (52-164)||(10824384-10824496)
chr1 (62-175)||(18844677-18844791)
chr1 (43-137)||(22683351-22683445)
chr1 (302-544)||(11356177-11356421)
chr1 (57-114)||(22683290-22683347)
chr1 (56-114)||(19056290-19056348)
chr1 (317-481)||(22426315-22426479)
chr1 (59-114)||(10824512-10824567)
chr1 (393-531)||(15249685-15249825)
chr1 (59-114)||(18844608-18844663)
chr1 (34-70)||(43190473-43190509)
[»] chr8 (25 HSPs)
chr8 (21-175)||(13884494-13884649)
chr8 (11-175)||(29714547-29714712)
chr8 (11-175)||(42126387-42126553)
chr8 (43-162)||(2554060-2554179)
chr8 (40-175)||(13884695-13884830)
chr8 (43-175)||(42126594-42126726)
chr8 (43-159)||(11867892-11868008)
chr8 (43-163)||(29714752-29714872)
chr8 (36-130)||(14996661-14996757)
chr8 (30-162)||(26745281-26745413)
chr8 (88-175)||(43416268-43416355)
chr8 (43-141)||(15862534-15862632)
chr8 (380-544)||(24733827-24733993)
chr8 (29-162)||(26745934-26746067)
chr8 (57-111)||(2554002-2554056)
chr8 (11-79)||(14996560-14996629)
chr8 (57-114)||(14996608-14996665)
chr8 (57-114)||(29714691-29714748)
chr8 (17-83)||(11867778-11867846)
chr8 (59-114)||(42126532-42126587)
chr8 (497-535)||(21462360-21462398)
chr8 (289-361)||(14194951-14195023)
chr8 (174-214)||(21462725-21462765)
chr8 (98-166)||(22621173-22621241)
chr8 (95-163)||(41178492-41178560)
[»] chr4 (19 HSPs)
chr4 (11-175)||(39161293-39161457)
chr4 (43-175)||(55173463-55173595)
chr4 (15-161)||(47096819-47096964)
chr4 (62-161)||(50509357-50509456)
chr4 (43-164)||(39161497-39161618)
chr4 (57-164)||(55173350-55173458)
chr4 (43-161)||(37996084-37996202)
chr4 (36-158)||(47097001-47097122)
chr4 (30-162)||(9738880-9739011)
chr4 (446-544)||(29551310-29551411)
chr4 (24-101)||(50509278-50509356)
chr4 (132-175)||(2623450-2623493)
chr4 (29-162)||(9738136-9738269)
chr4 (57-114)||(47096947-47097005)
chr4 (174-227)||(7630781-7630834)
chr4 (62-114)||(39161436-39161488)
chr4 (497-544)||(16740829-16740876)
chr4 (293-361)||(41508090-41508158)
chr4 (98-162)||(50531795-50531859)
[»] chr7 (20 HSPs)
chr7 (11-175)||(47373467-47373633)
chr7 (43-175)||(30862223-30862355)
chr7 (43-175)||(41985915-41986047)
chr7 (43-161)||(6474299-6474418)
chr7 (11-175)||(6474458-6474622)
chr7 (19-175)||(28715647-28715804)
chr7 (18-163)||(30862403-30862550)
chr7 (43-164)||(28715852-28715973)
chr7 (36-163)||(47373665-47373792)
chr7 (29-162)||(38408096-38408229)
chr7 (11-175)||(41986087-41986250)
chr7 (29-162)||(6271163-6271296)
chr7 (58-162)||(38407450-38407554)
chr7 (290-460)||(29882985-29883155)
chr7 (57-114)||(47373612-47373669)
chr7 (30-162)||(6270237-6270369)
chr7 (397-544)||(18501652-18501803)
chr7 (64-114)||(41986058-41986108)
chr7 (57-114)||(6474422-6474479)
chr7 (98-162)||(10257425-10257489)
[»] chr3 (20 HSPs)
chr3 (11-163)||(46003425-46003578)
chr3 (11-163)||(20537943-20538097)
chr3 (43-164)||(51663460-51663581)
chr3 (11-164)||(51663266-51663420)
chr3 (43-161)||(40244644-40244763)
chr3 (43-175)||(20538144-20538276)
chr3 (43-175)||(46003253-46003385)
chr3 (56-175)||(40364181-40364299)
chr3 (43-161)||(40364060-40364178)
chr3 (57-114)||(46003389-46003446)
chr3 (439-542)||(29583438-29583546)
chr3 (334-501)||(30857407-30857574)
chr3 (57-114)||(20538076-20538133)
chr3 (118-175)||(40244873-40244930)
chr3 (59-114)||(51663399-51663454)
chr3 (16-78)||(40244810-40244874)
chr3 (174-216)||(11893323-11893365)
chr3 (175-220)||(4143545-4143590)
chr3 (175-220)||(4159355-4159400)
chr3 (34-70)||(2224977-2225013)
[»] chr5 (5 HSPs)
chr5 (11-163)||(21249379-21249532)
chr5 (57-114)||(21249511-21249568)
chr5 (397-532)||(22415607-22415747)
chr5 (43-96)||(21249572-21249625)
chr5 (298-459)||(18180286-18180447)
[»] scaffold0060 (1 HSPs)
scaffold0060 (40-175)||(22912-23047)
[»] scaffold0781 (1 HSPs)
scaffold0781 (58-164)||(5260-5366)
[»] scaffold0034 (1 HSPs)
scaffold0034 (57-128)||(108047-108118)
[»] scaffold0036 (2 HSPs)
scaffold0036 (37-163)||(61025-61151)
scaffold0036 (30-163)||(60777-60910)
[»] scaffold0512 (1 HSPs)
scaffold0512 (400-481)||(11633-11714)


Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 544
Target Start/End: Complemental strand, 11643919 - 11643380
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgttttttg-agagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 109  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||| ||||||| ||||||||||||||||||||| |||||||||||| |||||||||    
T  11643919 cataggggaccaaattggtacataagttaacgttttttttagagaaactaacagagaggactaaaactagtaacaaaacaaaacatagggaaccaaattg 11643820  T
Q  110 gtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaattacacaaaattttcaaacacctaatattaattta 209  Q
     |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||| |||||||    
T  11643819 atacaaattatagttaggggatcaaattgagacaatcaattaaattaagggaccgggtgattgaattacacaaaattttcaaacacctaatactaattta 11643720  T
Q  210 ttaaaaatctagagctaaccctatggtccaa-aaaatagaggggaaaggagaaaaacaaatggaggggtgggaggga----gtcggggtaagatttgttt 304  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  11643719 ttaaaaatctaaagctaaccctgtggtccaagaaaatagaggggaaaggagaaaaacaaatggaggggtgggagggatggagtcggggtaagatttgttt 11643620  T
Q  305 catgtctagggtgaaagagacattgacggtcaaccttacatccaaacagaccaacctaacatctagaaaaatggtgcttctctacagtgtggcaccatct 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||    
T  11643619 catgtctagggtgaaagagacattgacggtcaaccttacatccaaacagaccaacctaacacctagaaaaatggtgcttctttgcagtgtggcaccatct 11643520  T
Q  405 ccgttgactgttcatacaatctctaaaattataaagtagtctttttgtatgaaagacaaacgatagaaacacattgtaaaagaaagtaggaggagagtgt 504  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||    
T  11643519 ccgttgaccgttcatacaatctctaaaattataaagtagtctttttgtatgaaagacaaatgatagaaacacattgtagaagaaaggaggaggagagtgt 11643420  T
Q  505 aagatgatggaatgagaaattgtgaaggatttaagggtat 544  Q
     |||||| ||||||||||||||||||||||||||||||||    
T  11643419 gagatgacggaatgagaaattgtgaaggatttaagggtat 11643380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 18494911 - 18495061
Alignment:
Q  12 ataggggaccaaattggtacataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggt 111  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| |||||||||| ||||  | ||||| |||||||||||||||| |    
T  18494911 ataggggaccaaattgctacataagttaacgtttttttagagaaactaacagaaagaactaaaactaataacggatcaaaatataggggaccaaattgat 18495010  T
Q  112 acaaattatagttaggggatcaaattgagacaatcaattaagttaagggac 162  Q
    |||||||||||||| ||||||||||| | | ||||||||||||||||||||    
T  18495011 acaaattatagttaagggatcaaattaatataatcaattaagttaagggac 18495061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 24798800 - 24798964
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgttttttg--agagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaatt 108  Q
    ||||||||||||||||| ||||  ||||||||||||||   ||| ||| ||  |||||||||||||||||||||| ||||||||||||||||||||||||    
T  24798800 cataggggaccaaattgataca--agttaacgtttttttttagaaaaactactagaaaggactaaaactagtaacgaagcaaaacataggggaccaaatt 24798897  T
Q  109 ggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    | ||||||||||||||||||||||||||| |||||||||||||| |||||||| || | ||||||||    
T  24798898 gatacaaattatagttaggggatcaaattaagacaatcaattaatttaagggatcgggtgattgaat 24798964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 2216803 - 2216909
Alignment:
Q  58 taacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaa 157  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2216803 taacataaatgactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaa 2216902  T
Q  158 gggaccg 164  Q
    |||||||    
T  2216903 gggaccg 2216909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 44 - 165
Target Start/End: Complemental strand, 24798761 - 24798640
Alignment:
Q  44 tttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagaca 143  Q
    ||||||||||||| ||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| |||    
T  24798761 tttttgagagaaactaacagaaatgactaaaactagtaacgaagcaaaacatagaggaccaaattggtacaaattatagtcaggggaccaaattgaaaca 24798662  T
Q  144 atcaattaagttaagggaccga 165  Q
    | ||||||||||||||||||||    
T  24798661 accaattaagttaagggaccga 24798640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 24690496 - 24690360
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaa----agcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattg 138  Q
    |||||||||||||| ||||||||| | |||||||||||||||     |||||||||||| ||||||||||||||||||||||||| |||||| |||||||    
T  24690496 ttttttgagagaaaataacagaaatggctaaaactagtaacacctagagcaaaacatagaggaccaaattggtacaaattatagtaaggggaccaaattg 24690397  T
Q  139 agacaatcaattaagttaagggaccgagcgattgaat 175  Q
    |||||||||||||||||||| ||||| | ||||||||    
T  24690396 agacaatcaattaagttaagagaccgggtgattgaat 24690360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 24690536 - 24690688
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgtttt-ttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 109  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||             ||||||||||||||||    
T  24690536 cataggagaccaaattggtacataagttaacgtttttttgagagaaattaatagaaaggactaaaactagt-------------ataggggaccaaattg 24690622  T
Q  110 gtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    ||||||||||||||||||| | |||||| | ||||||||||||||||||||| || | ||||||||    
T  24690623 gtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggatcgggtgattgaat 24690688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 18494869 - 18494751
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| || |||| |||||||||||    
T  18494869 tttttttagagaaactaacaaaaaggactaaaactagtaacaaagc-aaacataggggaccaaaatggtacaaattatagcta-gggaccaaattgagac 18494772  T
Q  143 aatcaattaagttaagggacc 163  Q
    ||||||| |||||||||||||    
T  18494771 aatcaataaagttaagggacc 18494751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 58 - 175
Target Start/End: Original strand, 11643974 - 11644090
Alignment:
Q  58 taacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttagggg-atcaaattgagacaatcaattaagtta 156  Q
    ||||||||| |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||    
T  11643974 taacagaaaagactaaaactagtaacaaag-aaaacataggg-accaaattgatacaaattatagttagggggaccaaattgagacaatcaattaagtta 11644071  T
Q  157 agggaccgagcgattgaat 175  Q
    |||||||| | ||||||||    
T  11644072 agggaccgggtgattgaat 11644090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 37 - 162
Target Start/End: Original strand, 9955573 - 9955698
Alignment:
Q  37 ttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaat 136  Q
    ||||||||||||||   ||| |||||||||||||  ||||| |||||| |||||||| ||| |||  || ||||||||||||||| |||||||| ||| |    
T  9955573 ttaacgttttttgacccaaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggatgaatttggtacaaattatatttaggggaccaatt 9955672  T
Q  137 tgagacaatcaattaagttaagggac 162  Q
    ||| |||| |||||||||||||||||    
T  9955673 tgatacaaacaattaagttaagggac 9955698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 375 - 544
Target Start/End: Original strand, 33553472 - 33553643
Alignment:
Q  375 atggtgcttctctacagtgtggcaccatctccgttgactgttcatacaatctctaaaattataaagtagtctttttgtatgaaagacaaacgatagaaac 474  Q
    ||||||||||| | ||| ||| ||||||| || || || |||||||||||| |||||||| || | ||| |||||| ||||||||   |||||| |||||    
T  33553472 atggtgcttctttgcagcgtgacaccatccccattaaccgttcatacaatccctaaaattctagaatagcctttttatatgaaaggtcaacgatggaaac 33553571  T
Q  475 acattgtaaaagaaagtaggagg--agagtgtaagatgatggaatgagaaattgtgaaggatttaagggtat 544  Q
    |||||||| ||||||| |||| |  ||| ||| | || ||||||||||||||||||||||||| ||| ||||    
T  33553572 acattgtagaagaaaggaggacgaaagactgtgaaattatggaatgagaaattgtgaaggattgaagagtat 33553643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 9954958 - 9954825
Alignment:
Q  29 tacataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggg 128  Q
    ||||||| ||||||||||||||   ||| ||||| |||||||  ||||| |||||  |||||||| ||| |||| || ||||||||||||||| ||||||    
T  9954958 tacataacttaacgttttttgacccaaactaacataaaggaccgaaactggtaacggagcaaaacttagaggacgaatttggtacaaattatatttaggg 9954859  T
Q  129 gatcaaattgagacaatcaattaagttaagggac 162  Q
    || ||| |||  |||| |||||||||||||||||    
T  9954858 gaccaatttggtacaaacaattaagttaagggac 9954825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 11643955 - 11643898
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||    
T  11643955 ttaacagaaatgactaaaactagtaacggagcaaaacataggggaccaaattggtaca 11643898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 24690500 - 24690557
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||||||||||||||||||| ||| | ||||||||||||| |||||||||||||||    
T  24690500 ttaacagaaaggactaaaactattaatagagcaaaacataggagaccaaattggtaca 24690557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 24798770 - 24798822
Alignment:
Q  63 gaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaa 115  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||| |||||    
T  24798770 gaaaggactaaaactaggaacggagcaaaacataggggaccaaattgatacaa 24798822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 18494874 - 18494931
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    ||||||||||| |||||||||||||| | ||| ||| |||||||||||||||| ||||    
T  18494874 ttaacagaaagaactaaaactagtaatagagcgaaatataggggaccaaattgctaca 18494931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 5693645 - 5693689
Alignment:
Q  117 ttatagttaggggatcaaattgagacaatcaattaagttaaggga 161  Q
    ||||||||| ||||||||||||||| ||| || ||||||||||||    
T  5693645 ttatagttaagggatcaaattgagaaaataaaataagttaaggga 5693689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 291 - 459
Target Start/End: Original strand, 20385937 - 20386105
Alignment:
Q  291 ggtaagatttgtttcatgtctagggtgaaagagacattgacggtcaaccttacatccaaacagaccaacctaacatctagaaaaatggtgcttctctaca 390  Q
    |||||| |||||||| | ||||||| ||||| ||| |||| ||||||||  ||| ||| |||||||||||  ||||| ||| |||  |||||||| | ||    
T  20385937 ggtaaggtttgtttcctttctagggagaaagggaccttgatggtcaaccagacacccagacagaccaacccgacatccagacaaaccgtgcttctttgca 20386036  T
Q  391 gtgtggcaccatctccgttgactgttcatacaatctctaaaattataaagtagtctttttgtatgaaag 459  Q
    | | | ||||||  || ||||| ||| |||||||  || || ||  |||||||||| ||| ||||||||    
T  20386037 gcgcgtcaccattcccattgaccgtttatacaattcctgaattttcaaagtagtctctttttatgaaag 20386105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 2916545 - 2916383
Alignment:
Q  13 taggggaccaaattggtacataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggta 112  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2916545 taggggaccaaattggtacataagttaacgttttttgagagaaactaacagaaaggattaaaactagtaacaaagcaaaacataggggaccaaattggta 2916446  T
Q  113 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || || | ||||||||    
T  2916445 caaattatagttaggggatcaaattgagacaatcaattaagttaagagatcgggtgattgaat 2916383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 16973234 - 16973069
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgttttt-tgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 109  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | ||||||||||||| |||||||||||||||||||||||||    
T  16973234 cataggggaccaaattggtacataagttaacgtttttatgagagaaactaacagaaagaattaaaactagtaacgaagcaaaacataggggaccaaattg 16973135  T
Q  110 gtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    ||||||| ||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||    
T  16973134 gtacaaactatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaat 16973069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 44594415 - 44594580
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgtttt-ttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 109  Q
    |||||||||| ||||||||||||||||| ||||||| |||||||||| || |||||| |||||||||||||||| ||||||||||||  |||||||||||    
T  44594415 cataggggactaaattggtacataagtttacgtttttttgagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataatggaccaaattg 44594514  T
Q  110 gtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
     |||||||||||||||||||| ||||||||||||||||||||| |||| |||||| | ||||||||    
T  44594515 atacaaattatagttaggggaccaaattgagacaatcaattaaattaaaggaccgggtgattgaat 44594580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 11 - 162
Target Start/End: Original strand, 38982734 - 38982886
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgtttt-ttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 109  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||| || |||||| |||||||||||||||  |||||||||||| || |||||||||    
T  38982734 cataagggaccaaattggtacataagttaacgtttttttgagagaaactaccagaaatgactaaaactagtaatgaagcaaaacataaggaaccaaattg 38982833  T
Q  110 gtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggac 162  Q
     ||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  38982834 atacaaattatagttaagggaccaaattgagacaatcaattaagttaagggac 38982886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 22 - 174
Target Start/End: Original strand, 40987834 - 40987987
Alignment:
Q  22 aaattggtacataagttaacg-ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattat 120  Q
    |||||| |||||||||||||| |||||||||||||| ||||||||| |||||||| ||| || | ||||||| |||||||||||||||  ||||||||||    
T  40987834 aaattgatacataagttaacggttttttgagagaaactaacagaaatgactaaaattagcaatagagcaaaatataggggaccaaattaatacaaattat 40987933  T
Q  121 agttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaa 174  Q
    |||||| |||||||||||||||||| |||||||||||| ||||| | |||||||    
T  40987934 agttagaggatcaaattgagacaattaattaagttaagagaccgggtgattgaa 40987987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 24126107 - 24126245
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattgg 110  Q
    ||||| ||||||||||| |||||||||||| ||||||| ||||||| ||||| ||||||||||||||||      ||||||||||| |||||||||||||    
T  24126107 catagtggaccaaattgatacataagttaatgtttttttagagaaactaacataaaggactaaaactag------agcaaaacataagggaccaaattgg 24126200  T
Q  111 tacaaattatagttaggggatcaaattgagacaatcaattaagtt 155  Q
    ||||||||||||||||| || |||||||||| |||||||||||||    
T  24126201 tacaaattatagttaggagaccaaattgagaaaatcaattaagtt 24126245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 43 - 164
Target Start/End: Complemental strand, 40987794 - 40987673
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||| ||||||| ||||| ||| ||||||||||||||||||| ||||||||| | ||| ||||||||||||||||||||||||| | |||||||||||    
T  40987794 tttttttagagaaactaacataaaagactaaaactagtaacaaatcaaaacatatgagactaaattggtacaaattatagttagggaaccaaattgagac 40987695  T
Q  143 aatcaattaagttaagggaccg 164  Q
    ||||||||||||||||||||||    
T  40987694 aatcaattaagttaagggaccg 40987673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 2916587 - 2916703
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||| ||| ||| ||||||||||| |||||||||||| |||||||||||    
T  2916587 ttttttgagagaaactaacagaaaggaccaaaactagtaacagagcaaaatatagaggatcaagttggtacaaataatagttaggggaccaaattgagac 2916686  T
Q  143 aatcaattaagttaagg 159  Q
    |||||||||||||||||    
T  2916687 aatcaattaagttaagg 2916703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 16973274 - 16973394
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||||||||||| | ||||||| |||||||||||||||   |||||||||||| |||||||||||  ||||||||||||||||||| |||||||||||    
T  16973274 ttttttgagagaaactgacagaaatgactaaaactagtaatggagcaaaacatagaggaccaaattgacacaaattatagttaggggaccaaattgagac 16973373  T
Q  143 aatcaattaagttaagggacc 163  Q
    |||||||||||||||||||||    
T  16973374 aatcaattaagttaagggacc 16973394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 24125836 - 24125975
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgttttttg-agagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 109  Q
    ||||||||||||||||| |||||||||||| |||||||  ||||||| |||||||||| |||||||||||      ||||||||||| ||||||||||||    
T  24125836 cataggggaccaaattgatacataagttaatgttttttttagagaaactaacagaaagaactaaaactag------agcaaaacataagggaccaaattg 24125929  T
Q  110 gtacaaattatagttaggggatcaaattgagacaatcaattaagtt 155  Q
    |||||||||||||||||| || |||||||||| ||| |||||||||    
T  24125930 gtacaaattatagttaggagaccaaattgagaaaattaattaagtt 24125975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 44594367 - 44594253
Alignment:
Q  62 agaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggg-gatcaaattgagacaatcaattaagttaaggg 160  Q
    |||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||  | |||||||||||||||||||||||||||||    
T  44594367 agaaagaactaaaactagtaacagagcaaaacatagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggg 44594268  T
Q  161 accgagcgattgaat 175  Q
    |||| | ||||||||    
T  44594267 accgggtgattgaat 44594253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 11533654 - 11533775
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacatagggg-accaaattggtacaaattatagttaggggatcaaattgaga 141  Q
    |||||| ||||| | ||| ||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  11533654 tttttttagagacactaatagaaatgactaaaactagtaataaagcaaaacatagggggaccaaattggtacaaattatagttgggggaccaaattgaga 11533753  T
Q  142 caatcaattaagttaagggacc 163  Q
    |||||| |||||||||| ||||    
T  11533754 caatcacttaagttaagagacc 11533775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 13559480 - 13559632
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattgg 110  Q
    ||||| ||||||||||  |||||| ||||||||||||  ||||||| ||||| ||| ||||||| ||||||||| |||||| || | |||||||| |||     
T  13559480 catagaggaccaaattaatacataggttaacgtttttctagagaaactaacataaatgactaaatctagtaacagagcaaagcacaagggaccaa-ttga 13559578  T
Q  111 tacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccg 164  Q
    |||||||||||||||||| | |||||||| ||||||||||||||||||||||||    
T  13559579 tacaaattatagttagggaaccaaattgaaacaatcaattaagttaagggaccg 13559632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 43 - 157
Target Start/End: Complemental strand, 38982694 - 38982580
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    ||||||||||| || ||| |||||||||||||||||| ||| ||||||||||||   |||||||||||||||||||||||||||||   |||||||||||    
T  38982694 ttttttgagagtaactaatagaaaggactaaaactagcaacgaagcaaaacataaatgaccaaattggtacaaattatagttagggagccaaattgagac 38982595  T
Q  143 aatcaattaagttaa 157  Q
    |||||||||||||||    
T  38982594 aatcaattaagttaa 38982580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 13559448 - 13559357
Alignment:
Q  36 gttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttagg 127  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||| ||||||| ||||| ||| | ||||||||||  ||||||||||||||||    
T  13559448 gttaacgtttttttagagaaactaacagaaatgactaaaactaataacaaaacaaaatatatgagaccaaattgaaacaaattatagttagg 13559357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 24125737 - 24125686
Alignment:
Q  113 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccg 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccg 24125686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 16973270 - 16973213
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  16973270 ttaacagaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtaca 16973213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 24125800 - 24125857
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||    
T  24125800 ttaacagaaatgactaaaactaataacagagcaaaacataggggaccaaattgataca 24125857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 393 - 536
Target Start/End: Complemental strand, 43924859 - 43924722
Alignment:
Q  393 gtggcaccatctccgttgactgttcatacaatctctaaaattataaagtagtctttttgtatgaaagacaaacgatagaaacacattgtaaaagaaagta 492  Q
    |||||||||| ||| |||||| ||||||||||| |||||||  || ||||  |||||||||||||||   |||| | ||||||||||||| |||||        
T  43924859 gtggcaccatgtccattgactattcatacaatccctaaaatactagagtaacctttttgtatgaaagcataacggtggaaacacattgtagaagaa---- 43924764  T
Q  493 ggaggagagtgtaagatgatggaatgagaaattgtgaaggattt 536  Q
      |||||| ||| ||||| ||||||||||| |||||||| ||||    
T  43924763 --aggagaatgtgagatgttggaatgagaatttgtgaagaattt 43924722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 44594381 - 44594436
Alignment:
Q  59 aacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    ||||||||||||||||||||| |||  ||||||||||||||||| |||||||||||    
T  44594381 aacagaaaggactaaaactaggaacggagcaaaacataggggactaaattggtaca 44594436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 38982700 - 38982755
Alignment:
Q  59 aacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||||||||||||||| || |||  ||||||||||| |||||||||||||||||    
T  38982700 aacagaaaggactaaaaccaggaacggagcaaaacataagggaccaaattggtaca 38982755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 34826537 - 34826403
Alignment:
Q  27 ggtacataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttag 126  Q
    |||| |||| ||||||||||||||   ||| |||||||||||||  |||| | ||||| |||||||| | | ||||  | ||||||||||||| | |||     
T  34826537 ggtatataacttaacgttttttgaccaaaactaacagaaaggacctaaaccattaacagagcaaaactttgaggacgcatttggtacaaattaaatttac 34826438  T
Q  127 gggatcaaattgagacaatcaattaagttaaggga 161  Q
    |||| ||| |||  |||| ||||||||||||||||    
T  34826437 gggaccaatttggtacaaacaattaagttaaggga 34826403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 2916583 - 2916526
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||||||| ||||||||||| ||||  |||||||  ||||||||||||||||||||    
T  2916583 ttaacagaaaagactaaaactaataacggagcaaaatgtaggggaccaaattggtaca 2916526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 24126071 - 24126128
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||||||| | ||||||||||||| | |||||||||||| ||||||||||| ||||    
T  24126071 ttaacagaaatggctaaaactagtaatagagcaaaacatagtggaccaaattgataca 24126128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 544
Target Start/End: Original strand, 32121616 - 32121770
Alignment:
Q  393 gtggcaccatctccgttgactgttcatacaatctctaaaattataaagtagtctttttgtatgaaagacaaacgatagaaacacattgta-aaagaaagt 491  Q
    ||||||||||| |  |||||  ||||||||||| |||||||  || ||||   |||||||||||||| | |||||| ||||||| ||||| ||||||||     
T  32121616 gtggcaccatcacttttgaccattcatacaatcgctaaaatattagagtaacatttttgtatgaaagtctaacgatggaaacacgttgtagaaagaaagg 32121715  T
Q  492 aggag--gagagtgtaagatgatggaatgagaaattgtgaaggatttaagggtat 544  Q
    || ||  |||||||| ||||| |||||||   ||||| |||||||| | ||||||    
T  32121716 agaaggagagagtgtgagatgttggaatggtgaattgcgaaggattgatgggtat 32121770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 22683311 - 22683146
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgtttttt-gagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 109  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22683311 cataggggaccaaattggtacataagttaacgtttttttgagagaaactaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 22683212  T
Q  110 gtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
     |||||||||||||||||||| |||||||||||||||||||||||||| ||| || | ||||||||    
T  22683211 atacaaattatagttaggggaccaaattgagacaatcaattaagttaaaggagcgggtgattgaat 22683146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 11 - 164
Target Start/End: Original strand, 10824546 - 10824700
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgtttt-ttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 109  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||| ||  |||||||||||||||||||||| |||||||||||||||||||||||||    
T  10824546 cataggggatcaaattggtacataagttaacgtttttttgagagaaactactagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattg 10824645  T
Q  110 gtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccg 164  Q
     |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10824646 atacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccg 10824700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 18844629 - 18844476
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgtttttt-gagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 109  Q
    |||||||||| ||||||||||||||||| ||||||||| |||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  18844629 cataggggactaaattggtacataagtttacgtttttttgagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggaccaaattg 18844530  T
Q  110 gtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggacc 163  Q
     |||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  18844529 atacaaattatagttaggggaccaaattgagataatcaattaagttaagggacc 18844476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 19056330 - 19056482
Alignment:
Q  14 aggggaccaaattggtacataagttaacgtttt--ttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggt 111  Q
    |||||||||||||||||||||||||||||||||  |||||||||| | ||||||| |||||||||||||||||||||||||||||||  |||||||||||    
T  19056330 aggggaccaaattggtacataagttaacgttttttttgagagaaactgacagaaatgactaaaactagtaacaaagcaaaacataggataccaaattggt 19056429  T
Q  112 acaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccg 164  Q
    ||| ||||||||||||||| |||||| | ||||||||||||||||||||||||    
T  19056430 acagattatagttaggggaccaaattaaaacaatcaattaagttaagggaccg 19056482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 37189523 - 37189678
Alignment:
Q  14 aggggaccaaattggtacataagttaacgttttttg------agagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaat 107  Q
    |||||||| ||||||||||||||||||||||||||       ||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||    
T  37189523 aggggaccgaattggtacataagttaacgtttttttttttttagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggaccaaat 37189622  T
Q  108 tggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggacc 163  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  37189623 tggtacaaattatagataggggaccaaattgagacaatcaattaagttaagggacc 37189678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 15825731 - 15825861
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||    
T  15825731 ttttttgagagaaactaataaaaaggactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagtta--ggaccaaattgagac 15825828  T
Q  143 aatcaattaagttaagggaccgagcgattgaat 175  Q
    |||||||||||||||| ||||| | ||||||||    
T  15825829 aatcaattaagttaagagaccgggtgattgaat 15825861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 19056287 - 19056169
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||| |||||| | ||    
T  19056287 ttttttgagagaaactaacagaaaagactaaaactagtaacaaagcaaaatataggggaccaaattgatacaaattataattaggggaccaaattaatac 19056188  T
Q  143 aatcaattaagttaaggga 161  Q
    |||||||||||||||||||    
T  19056187 aatcaattaagttaaggga 19056169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 58 - 159
Target Start/End: Complemental strand, 37189489 - 37189388
Alignment:
Q  58 taacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaa 157  Q
    ||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||    
T  37189489 taacagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtacaaattatagttatgagaccaaattgagacaatcaattaagttaa 37189390  T
Q  158 gg 159  Q
    ||    
T  37189389 gg 37189388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 10824496 - 10824384
Alignment:
Q  52 agaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaatta 151  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||| ||||||||||| ||||||||||| |||||||| |||||||  | |||||||||    
T  10824496 agaaactaacagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattgatacaaattataattaggggaccaaattgcaataatcaatta 10824397  T
Q  152 agttaagggaccg 164  Q
    |||||| ||||||    
T  10824396 agttaaaggaccg 10824384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 18844677 - 18844791
Alignment:
Q  62 agaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggg-gatcaaattgagacaatcaattaagttaaggg 160  Q
    |||||| |||||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||||  | |||||||||||||||||||||||||||||    
T  18844677 agaaagaactaaaactagtaacggagcaaaacatagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggg 18844776  T
Q  161 accgagcgattgaat 175  Q
    | || | ||||||||    
T  18844777 atcgggtgattgaat 18844791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 22683351 - 22683445
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaatt 137  Q
    |||||||||||||| ||| ||||||||||||||||||||||  |||||||||||| ||||||||||||||||||| | |||||||||| ||||||    
T  22683351 ttttttgagagaaactaagagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtacaaataaaagttaggggaccaaatt 22683445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 544
Target Start/End: Complemental strand, 11356421 - 11356177
Alignment:
Q  302 tttcatgtctagggtgaaagagacattgacggtcaaccttacatccaaacagaccaac-ctaacatctagaaaaatggtgcttctctacagtgtggcacc 400  Q
    |||| ||||||||||||||||||| |||| |||||||||||||  | | || |||||  || ||| | | | | ||||  ||||| | ||| ||| ||||    
T  11356421 tttcttgtctagggtgaaagagaccttgatggtcaaccttacactccagcataccaattctcacacccaaacatatggcacttctttgcagcgtgacacc 11356322  T
Q  401 atctccgttgactgttcatacaatctctaaaattataaagtagtctttttgtatgaaagacaaacgatagaaacacattgtaaaagaaagtaggaggaga 500  Q
    || ||| ||||  | |||||||||| |||||||| || |||| |||||||||| ||||| | |||||| ||||||||||||| || |||  |||||||||    
T  11356321 atttccattgatcgatcatacaatccctaaaattctagagtattctttttgta-gaaaggctaacgatggaaacacattgtagaataaataaggaggaga 11356223  T
Q  501 gtgta--agatgatggaatgagaaattgtgaaggatttaagggtat 544  Q
    | ||   ||||||||  |||| ||||||||||||||| ||||||||    
T  11356222 gagtgcgagatgatgtgatgataaattgtgaaggattaaagggtat 11356177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 22683347 - 22683290
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  22683347 ttaatagaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtaca 22683290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 19056290 - 19056348
Alignment:
Q  56 attaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    ||||||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||    
T  19056290 attaacagaaaagacttaaactagtaacgaagcaaaacacaggggaccaaattggtaca 19056348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 317 - 481
Target Start/End: Original strand, 22426315 - 22426479
Alignment:
Q  317 gaaagagacattgacggtcaaccttacatccaaacagaccaacctaacatctagaaaaatggtgcttctctacagtgtggcaccatctccgttgactgtt 416  Q
    ||||||||| |||| |||||||||| || ||||||| ||||| || ||| ||||| ||||   |||||| | ||| ||| || |||| || |||||||||    
T  22426315 gaaagagaccttgatggtcaaccttgcacccaaacaaaccaagctcacacctagacaaatcacgcttctttgcagcgtgtcatcatccccattgactgtt 22426414  T
Q  417 catacaatctctaaaattataaagtagtctttttgtatgaaagacaaacgatagaaacacattgt 481  Q
    |||||||||| |||| ||  ||||||| |||||| || |||||   |||||| |||| |||||||    
T  22426415 catacaatctttaaattttcaaagtagcctttttttaagaaaggtcaacgatggaaatacattgt 22426479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Original strand, 10824512 - 10824567
Alignment:
Q  59 aacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    ||||||||||||||||||||| |||  |||||||||||||||| ||||||||||||    
T  10824512 aacagaaaggactaaaactaggaacggagcaaaacataggggatcaaattggtaca 10824567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 531
Target Start/End: Complemental strand, 15249825 - 15249685
Alignment:
Q  393 gtggcaccatctccgttgactgttcatacaatctctaaaattataaagtagtctttttgtatgaaagacaaacgatagaaacacattgtaaaagaaagta 492  Q
    ||||||||| | || ||||| ||||||||||||||| ||||  || ||||  ||||||||||||||||| |||  | ||| ||||||||| ||||||  |    
T  15249825 gtggcaccaccacctttgaccgttcatacaatctctgaaatattagagtaacctttttgtatgaaagactaacagtggaagcacattgtagaagaaaaga 15249726  T
Q  493 g--gaggagagtgtaagatgatggaatgagaaattgtgaag 531  Q
    |  ||  ||| ||| |||||||| |||||||||||||||||    
T  15249725 gaagaaaagaatgtgagatgatgaaatgagaaattgtgaag 15249685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 18844663 - 18844608
Alignment:
Q  59 aacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||| |||||||||||||||| |||  || |||||||||||||| |||||||||||    
T  18844663 aacaaaaaggactaaaactaggaacggagtaaaacataggggactaaattggtaca 18844608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 43190473 - 43190509
Alignment:
Q  34 aagttaacgttttttgagagaaattaacagaaaggac 70  Q
    ||||||||||||||||| | |||||||||||||||||    
T  43190473 aagttaacgttttttgacaaaaattaacagaaaggac 43190509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 1e-58; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 13884649 - 13884494
Alignment:
Q  21 caaattggtacataagttaacgtttttt-gagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaatta 119  Q
    |||||||||||||||||||||||||||| |||||||| || |||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  13884649 caaattggtacataagttaacgtttttttgagagaaactaccagaaaagactaaaactagtaacgaagcaaaacatagggggccaaattggtacaaatta 13884550  T
Q  120 tagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||    
T  13884549 tagttaggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaat 13884494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 29714712 - 29714547
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgtttttt-gagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 109  Q
    |||||| ||||||||||||||||||||||||||||||  |||||||| ||||||||| || |||| ||||||||||||||||| ||||||||||||||||    
T  29714712 cataggagaccaaattggtacataagttaacgtttttacgagagaaactaacagaaatgattaaagctagtaacaaagcaaaatataggggaccaaattg 29714613  T
Q  110 gtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||    
T  29714612 gtacaaactatagtttggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaat 29714547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 42126553 - 42126387
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgttttttg--agagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaatt 108  Q
    ||||||||||||||||| ||||||||||||||||||||   ||||||| || ||||||||||||||||||||| | |||||||||||||||| |||||||    
T  42126553 cataggggaccaaattgatacataagttaacgtttttttgtagagaaactaccagaaaggactaaaactagtagcgaagcaaaacatagggggccaaatt 42126454  T
Q  109 ggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    | |||||||||||||||| | |||||||||||||||| |||||||||||||||||| | ||||||||    
T  42126453 gatacaaattatagttagagaatcaaattgagacaattaattaagttaagggaccgggtgattgaat 42126387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 2554060 - 2554179
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||||||||||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  2554060 ttttttgagagaaactaacagaaagaactaaaacaagtaacaaagcaaaacataggagaccaaattggaacaaattatagttaggggatcaaattgagac 2554159  T
Q  143 aatcaattaagttaagggac 162  Q
    ||||||||||||||||||||    
T  2554160 aatcaattaagttaagggac 2554179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 13884695 - 13884830
Alignment:
Q  40 acgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattga 139  Q
    |||||||||| |||||| ||||| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  13884695 acgttttttgtgagaaactaacaaaaaggactaaaaccagtaacgaagcaaaacatagaggaccaaattggtacaaattatagttaggggactaaattga 13884794  T
Q  140 gacaatcaattaagttaagggaccgagcgattgaat 175  Q
    ||||||||||||||||||||||||| | ||||||||    
T  13884795 gacaatcaattaagttaagggaccgggtgattgaat 13884830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 42126594 - 42126726
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||| ||||||| ||||||||| |||||||| |||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||     
T  42126594 tttttttagagaaactaacagaaatgactaaaattagtgacagagcaaaacttagaggaccaaattggtacaaattatagttaggggatcaaattgagat 42126693  T
Q  143 aatcaattaagttaagggaccgagcgattgaat 175  Q
    |||||||||||||||||||||| | ||||||||    
T  42126694 aatcaattaagttaagggaccgggtgattgaat 42126726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 11867892 - 11868008
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||| |||||||||| ||||||||||| ||||||||||||||| || | |||||||||||    
T  11867892 ttttttgagagaaactaacataaaggactaaaactagtgacaaatcaaaacatagaggaccaaattgatacaaattatagttaaggaaccaaattgagac 11867991  T
Q  143 aatcaattaagttaagg 159  Q
    |||||||||||||||||    
T  11867992 aatcaattaagttaagg 11868008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 43 - 163
Target Start/End: Original strand, 29714752 - 29714872
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||||||||||| | ||| ||| |||||||||||||||  ||||||||||||| ||||||||||| ||||||||||||||| |||| |||||| | ||    
T  29714752 ttttttgagagaaactgacataaatgactaaaactagtaatgaagcaaaacatagaggaccaaattgatacaaattatagttaagggaccaaattaaaac 29714851  T
Q  143 aatcaattaagttaagggacc 163  Q
    |||||||||||||||||||||    
T  29714852 aatcaattaagttaagggacc 29714872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 14996661 - 14996757
Alignment:
Q  36 gttaacgt-tttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacata-ggggaccaaattggtacaaattatagttagggga 130  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  14996661 gttaacgtgtttttgatagaaactaacagaaaggactaaaactagtaacaaagcaaaacatagggggatcaaattggtacaaattataattagggga 14996757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 26745413 - 26745281
Alignment:
Q  30 acataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttagggg 129  Q
    |||||| ||||||||||||||   ||| |||||||||||||  ||||| |||||| |||||||| ||| |||| || ||||||||||||||| |||||||    
T  26745413 acataatttaacgttttttgacccaaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttagggg 26745314  T
Q  130 atcaaattgagacaatcaattaagttaagggac 162  Q
    | ||| ||   |||| |||||||||||||||||    
T  26745313 accaatttagtacaaacaattaagttaagggac 26745281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 43416355 - 43416268
Alignment:
Q  88 caaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    ||||||||||| ||  |||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||  ||||||||    
T  43416355 caaaacataggagattaaattgatacaaattatagttaggggattaaattaagacaatcaattaagttaagagaccgaatgattgaat 43416268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 15862534 - 15862632
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgaga 141  Q
    |||||||||||||| |||  ||||| | |||||| ||||||  |||||| ||||| ||||||||||  |||||||||||||||||||||||||||||||    
T  15862534 ttttttgagagaaactaatggaaagtattaaaaccagtaacggagcaaatcatagaggaccaaattaatacaaattatagttaggggatcaaattgaga 15862632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 380 - 544
Target Start/End: Original strand, 24733827 - 24733993
Alignment:
Q  380 gcttctctacagtgtggcaccatctccgttgactgttcatacaatctctaaaattataaagtagtctttttgtatgaaagacaaacgatagaaacacatt 479  Q
    |||||| | ||| ||||||||||| || || || |||||||||||| || || ||  |||||||||||||||||||||||||  ||||| |||| |||||    
T  24733827 gcttctttgcagcgtggcaccatccccattaaccgttcatacaatccctgaattttcaaagtagtctttttgtatgaaagaccgacgatggaaatacatt 24733926  T
Q  480 gt---aaaagaaagtaggaggagagtgtaagatgatggaatgagaaattgtgaaggatttaagggtat 544  Q
    ||   | ||| ||| || ||||||||||||||||||||  ||||||||| ||||| ||| ||||||||    
T  24733927 gttgtagaaggaag-agaaggagagtgtaagatgatggtgtgagaaattatgaagaattgaagggtat 24733993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 26745934 - 26746067
Alignment:
Q  29 tacataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggg 128  Q
    ||||||| ||||||||||||||   ||| |||||||||||||  ||||| ||||   |||||||| ||| |||| || ||||||||||||||| ||||||    
T  26745934 tacataacttaacgttttttgacccaaactaacagaaaggaccgaaactggtaatggagcaaaacttagaggacgaatttggtacaaattatatttaggg 26746033  T
Q  129 gatcaaattgagacaatcaattaagttaagggac 162  Q
    || ||| |||| |||| ||| |||||||||||||    
T  26746034 gaccaatttgatacaaacaaataagttaagggac 26746067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 2554056 - 2554002
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggt 111  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  2554056 ttaacagaaaggactaaaactagtaacgaagtaaaacataggggaccaaattggt 2554002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 14996629 - 14996560
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgtt-ttttgagagaaattaacagaaaggactaaaactag 79  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||    
T  14996629 cataggggaccaaattagtacataagttaacgtttttttgagagaaactaacagagaggacaaaaactag 14996560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 14996665 - 14996608
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||    
T  14996665 ttaacagaaaagactaaaactagtaacgaagcaaaacataggggaccaaattagtaca 14996608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 29714748 - 29714691
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||||||||||||||||||||||||  || |||||||||| |||||||||||||||    
T  29714748 ttaacagaaaggactaaaactagtaacggagtaaaacataggagaccaaattggtaca 29714691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 11867846 - 11867778
Alignment:
Q  17 ggaccaaattggtacataagttaacgtttttt--gagagaaattaacagaaaggactaaaactagtaac 83  Q
    |||| ||||||||| |||||||||||||||||  |||||||| || |||||| || |||||||||||||    
T  11867846 ggactaaattggtaaataagttaacgttttttttgagagaaactatcagaaaagattaaaactagtaac 11867778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 42126587 - 42126532
Alignment:
Q  59 aacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||||| |||||||||||  |||  |||||||||||||||||||||||| ||||    
T  42126587 aacagaaaagactaaaactaagaacggagcaaaacataggggaccaaattgataca 42126532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 535
Target Start/End: Complemental strand, 21462398 - 21462360
Alignment:
Q  497 gagagtgtaagatgatggaatgagaaattgtgaaggatt 535  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  21462398 gagagtttaatatgatggaatgagaaattgtgaaggatt 21462360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 14195023 - 14194951
Alignment:
Q  289 ggggtaagatttgtttcatgtctagggtgaaagagacattgacggtcaaccttacatccaaacagaccaacct 361  Q
    |||||||| ||| |||| | |||||||  |||||||| |||| |||||||||| || ||| ||||||||||||    
T  14195023 ggggtaaggtttctttcctctctagggcaaaagagaccttgatggtcaaccttgcacccagacagaccaacct 14194951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 21462765 - 21462725
Alignment:
Q  174 attacacaaaattttcaaacacctaatattaatttattaaa 214  Q
    |||| ||||||||||||||||||||||  ||||||||||||    
T  21462765 attatacaaaattttcaaacacctaatgctaatttattaaa 21462725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 22621173 - 22621241
Alignment:
Q  98 gggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccgag 166  Q
    ||||||||||||  |||  | ||||||| ||||||||| ||||| ||| || |||||||||||||||||    
T  22621173 gggaccaaattgccacacttaatagttaagggatcaaactgagaaaataaaataagttaagggaccgag 22621241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 41178560 - 41178492
Alignment:
Q  95 taggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggacc 163  Q
    |||||||||||||||  |||| ||| |||||| |||||||||||| | ||  || ||||||||||||||    
T  41178560 taggggaccaaattgagacaatttaaagttagaggatcaaattgaaataaaaaaataagttaagggacc 41178492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 6e-57; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 39161457 - 39161293
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattgg 110  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||| |  ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  39161457 catatgggaccaaattggtacataagttaatgttttttgagagaaactttcagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgg 39161358  T
Q  111 tacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    |||||||||||||||||||| |||||| ||||| ||||||||||||| ||| || | ||||||||    
T  39161357 tacaaattatagttaggggaccaaattaagacattcaattaagttaaaggatcgggtgattgaat 39161293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 55173463 - 55173595
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||||||||||| || || ||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  55173463 ttttttgagagaaactagcaaaaaagactaaaacaagtaacaaagcaaagcataggggaccaaattggtacaaattatagttaggagatcaaattgagac 55173562  T
Q  143 aatcaattaagttaagggaccgagcgattgaat 175  Q
    |||||||||||||||||||||| | ||||||||    
T  55173563 aatcaattaagttaagggaccgggtgattgaat 55173595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 47096964 - 47096819
Alignment:
Q  15 ggggaccaaattggtacataagttaacgttttttg-agagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtac 113  Q
    |||||||||||||||||||||||||| |||||||| |||||||  |||| ||||||||||||| |||||| |||||||||||||||| | ||||||||||    
T  47096964 ggggaccaaattggtacataagttaaagttttttgtagagaaacaaacataaaggactaaaacaagtaacgaagcaaaacatagggggc-aaattggtac 47096866  T
Q  114 aaattatagttaggggatcaaattgagacaatcaattaagttaaggga 161  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||||    
T  47096865 aaattat-gttaggggaccaaattgagataatcaattaagttaaggga 47096819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 50509357 - 50509456
Alignment:
Q  62 agaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaaggga 161  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  50509357 agaaaagactaaaattagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaaggga 50509456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 39161497 - 39161618
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    ||||| |||||||| ||||||||||||||||||||| ||||  |||||||||||| |||| ||||||||||||||||||||||||||| |||||| | ||    
T  39161497 tttttcgagagaaactaacagaaaggactaaaactaataacggagcaaaacatagaggactaaattggtacaaattatagttaggggaccaaattaaaac 39161596  T
Q  143 aatcaattaagttaagggaccg 164  Q
    ||||||||||||||||| ||||    
T  39161597 aatcaattaagttaaggaaccg 39161618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 57 - 164
Target Start/End: Complemental strand, 55173458 - 55173350
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacatagggg-accaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagtt 155  Q
    |||||||||||||||||||||||||||  ||||||| ||||||| ||||||||  |||||||||||||||||||| |||||| |||||||||||||||||    
T  55173458 ttaacagaaaggactaaaactagtaacggagcaaaatatagggggaccaaattaatacaaattatagttaggggaccaaattaagacaatcaattaagtt 55173359  T
Q  156 aagggaccg 164  Q
    |||| ||||    
T  55173358 aaggaaccg 55173350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 37996202 - 37996084
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||| ||||||| ||| | ||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| ||    
T  37996202 tttttttagagaaactaataaaaaagactaaaactaataacaaagcaaaacataggggaccaaattgatacaaattatagttaagggaccaaattgaaac 37996103  T
Q  143 aatcaattaagttaaggga 161  Q
    ||||| || | ||||||||    
T  37996102 aatcattttaattaaggga 37996084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 158
Target Start/End: Original strand, 47097001 - 47097122
Alignment:
Q  36 gttaacgtttttt--gagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatca 133  Q
    |||||||||||||  |||||||| ||||| ||| ||||||||||||||||   |||||||||||   | |||||||||||||||||||||||| |||  |    
T  47097001 gttaacgtttttttggagagaaactaacaaaaatgactaaaactagtaacggggcaaaacatag---atcaaattggtacaaattatagttagaggacta 47097097  T
Q  134 aattgagacaatcaattaagttaag 158  Q
    |||||||||||||||||||||||||    
T  47097098 aattgagacaatcaattaagttaag 47097122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 9738880 - 9739011
Alignment:
Q  30 acataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttagggg 129  Q
    |||||| ||||| ||||||||   |||||||||||||||||  ||||| |||||| | |||||| ||| |||| || ||||||||||||||| |||||||    
T  9738880 acataacttaacattttttgacccaaattaacagaaaggaccgaaactggtaacaga-caaaacttagaggacgaatttggtacaaattatatttagggg 9738978  T
Q  130 atcaaattgagacaatcaattaagttaagggac 162  Q
    | ||| |||| |||| |||| ||||||||||||    
T  9738979 accaatttgatacaaacaatcaagttaagggac 9739011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 446 - 544
Target Start/End: Original strand, 29551310 - 29551411
Alignment:
Q  446 tttttgtatgaaagacaaacgatagaaacacattgta-aaagaaagtaggag--gagagtgtaagatgatggaatgagaaattgtgaaggatttaagggt 542  Q
    |||||||||||||||| ||| |||||||||||| ||| |||||||| || ||  |||||||| ||||||| ||||||||||||||| |||||| ||||||    
T  29551310 tttttgtatgaaagacgaacaatagaaacacatggtagaaagaaaggagaagaagagagtgtgagatgatagaatgagaaattgtgtaggattgaagggt 29551409  T
Q  543 at 544  Q
    ||    
T  29551410 at 29551411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 50509356 - 50509278
Alignment:
Q  24 attggtacataagttaacgtttttt-gagagaaattaacagaaaggactaaaactagtaacaaagcaaaacatagggga 101  Q
    ||||||||||||||||||||||||| || ||||| ||||||||| |||||||| || ||||||||||||| ||||||||    
T  50509356 attggtacataagttaacgtttttttgaaagaaactaacagaaaagactaaaattaataacaaagcaaaatatagggga 50509278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 175
Target Start/End: Original strand, 2623450 - 2623493
Alignment:
Q  132 caaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  2623450 caaattgagacaatcaattaagttaagggaccgagtgattgaat 2623493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 9738269 - 9738136
Alignment:
Q  29 tacataagttaacgttttttgagag-aaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttagg 127  Q
    ||||||| ||||||||||||||    ||| ||||| |||||||  ||||| |||||  |||||||| ||| |||| || ||||||||||||||| |||||    
T  9738269 tacataacttaacgttttttgaccccaaactaacaaaaaggaccgaaact-gtaacggagcaaaacttagaggacgaatttggtacaaattatatttagg 9738171  T
Q  128 ggatcaaattgagacaatcaattaagttaagggac 162  Q
    ||| ||| |||  |||| |||||||||||||||||    
T  9738170 ggaccaatttggtacaaacaattaagttaagggac 9738136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 47097005 - 47096947
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacata-ggggaccaaattggtaca 114  Q
    ||||||||||||||||||||||||||   ||||||||||| ||||||||||||||||||    
T  47097005 ttaacagaaaggactaaaactagtaatggagcaaaacatagggggaccaaattggtaca 47096947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 7630781 - 7630834
Alignment:
Q  174 attacacaaaattttcaaacacctaatattaatttattaaaaatctagagctaa 227  Q
    |||||||||||||||||||||||||||  | |||||||||||| ||| ||||||    
T  7630781 attacacaaaattttcaaacacctaatgcttatttattaaaaacctaaagctaa 7630834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 39161488 - 39161436
Alignment:
Q  62 agaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||||||||||||||| |||  | ||||||||| |||||||||||||||||    
T  39161488 agaaaggactaaaactaggaacggatcaaaacatatgggaccaaattggtaca 39161436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Original strand, 16740829 - 16740876
Alignment:
Q  497 gagagtgtaagatgatggaatgagaaattgtgaaggatttaagggtat 544  Q
    |||||||| ||||||||| ||||||| |||||||||||| ||||||||    
T  16740829 gagagtgtgagatgatgggatgagaatttgtgaaggattcaagggtat 16740876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 41508090 - 41508158
Alignment:
Q  293 taagatttgtttcatgtctagggtgaaagagacattgacggtcaaccttacatccaaacagaccaacct 361  Q
    |||| |||||||| | | ||||||||||||||  |||  ||||||||||||| |||| |||||||||||    
T  41508090 taaggtttgtttcctttttagggtgaaagagatcttggtggtcaaccttacacccaagcagaccaacct 41508158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 50531795 - 50531859
Alignment:
Q  98 gggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggac 162  Q
    ||||||||||||  |||  | ||||||| ||||||||||||||| ||| || |||||||||||||    
T  50531795 gggaccaaattgagacacttaatagttaagggatcaaattgagaaaataaaataagttaagggac 50531859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 47373633 - 47373467
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattgg 110  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |||| |||||||||||||||||||||||||    
T  47373633 cataggggactaaattggtacataagttaacgttttttgagagaaactaacataaatgactaaaactagcaacagagcaaaacataggggaccaaattgg 47373534  T
Q  111 tacaaat--tatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    |||||||  |||| |||| ||||||||||||||||||||||||||||||| || |||| ||||||||    
T  47373533 tacaaattatataattagaggatcaaattgagacaatcaattaagttaagagatcgagtgattgaat 47373467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 30862355 - 30862223
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||| |||||| |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  30862355 tttttttagagaacttaacagaatagactaaaactagtaacaaagcaaaatataggggaccaaattggtacaaattatagttaggggaccaaattcagac 30862256  T
Q  143 aatcaattaagttaagggaccgagcgattgaat 175  Q
    |||||||||||||||||||||||  ||||||||    
T  30862255 aatcaattaagttaagggaccgaatgattgaat 30862223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 41986047 - 41985915
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||||||||||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  41986047 ttttttgagagaaactaacggaaaggactaaaattagtaacaaagcaaaacatatgggaccaaattgaaacaaattatagttaggggatcaaattgagac 41985948  T
Q  143 aatcaattaagttaagggaccgagcgattgaat 175  Q
    |||||||||||||||||||| | | ||||||||    
T  41985947 aatcaattaagttaagggactgggtgattgaat 41985915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 6474418 - 6474299
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaa-cataggggaccaaattggtacaaattatagttaggggatcaaattgaga 141  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||    
T  6474418 ttttttgagagaaactaacagaaaagactaaaactagtaacaaagcaaaaacataggggaccaaattgatataaattatagttaggggatcaaattgaga 6474319  T
Q  142 caatcaattaagttaaggga 161  Q
    ||||||||||||||||||||    
T  6474318 caatcaattaagttaaggga 6474299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 6474458 - 6474622
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgtttt-ttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 109  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||| |||||| |||| |||| ||||| |    
T  6474458 cataagggaccaaattggtacataagttaacgtttttttgagagaaactaacataaaggactaaaactagtaacagagcaaagcataagggagcaaatcg 6474557  T
Q  110 gtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    |||| ||||||||||||| || |||||| ||||||||||||||||||||||| || | ||||||||    
T  6474558 gtac-aattatagttaggagaccaaattaagacaatcaattaagttaagggatcgggtgattgaat 6474622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 28715804 - 28715647
Alignment:
Q  19 accaaattggtacataagttaacgttttttg-agagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaat 117  Q
    |||||||||||| |||||||||||||||||  ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  28715804 accaaattggtatataagttaacgttttttttagagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaat 28715705  T
Q  118 tatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    ||||||||||  | |||||| | ||||| |||||||||||||||||| | ||||||||    
T  28715704 tatagttaggaaaccaaattaaaacaattaattaagttaagggaccgggtgattgaat 28715647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 30862403 - 30862550
Alignment:
Q  18 gaccaaattggtacataagttaacg--ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaa 115  Q
    |||||||||||||||||||||||||  |||||||||||||| ||||||||| |||||||| |||||||| ||||||||||| |||||||||||| |||||    
T  30862403 gaccaaattggtacataagttaacgatttttttgagagaaactaacagaaaagactaaaattagtaacagagcaaaacataagggaccaaattgatacaa 30862502  T
Q  116 attatagttaggggatcaaattgagacaatcaattaagttaagggacc 163  Q
    ||||||||||||| |  ||||||| |||||||||| | ||||||||||    
T  30862503 attatagttagggaacaaaattgaaacaatcaattcaattaagggacc 30862550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 28715852 - 28715973
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||||||||||| ||||||||| ||||||||||||| ||  |||||||| ||| |||||||||||||||||||||||||||||||| |||||| ||||    
T  28715852 ttttttgagagaaactaacagaaatgactaaaactagtgactgagcaaaacttagaggaccaaattggtacaaattatagttaggggaccaaattaagac 28715951  T
Q  143 aatcaattaagttaagggaccg 164  Q
    ||||||||||||||||||||||    
T  28715952 aatcaattaagttaagggaccg 28715973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 36 - 163
Target Start/End: Original strand, 47373665 - 47373792
Alignment:
Q  36 gttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaa 135  Q
    ||||||||||||| ||||||| ||||| |||||| |||||||||||||| | ||||||||| | ||| |||||||||||||||||| |||||||| ||||    
T  47373665 gttaacgttttttaagagaaactaacataaaggattaaaactagtaacacatcaaaacatatgagactaaattggtacaaattataattaggggaccaaa 47373764  T
Q  136 ttgagacaatcaattaagttaagggacc 163  Q
    ||||||||||||||||||||||||||||    
T  47373765 ttgagacaatcaattaagttaagggacc 47373792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 38408096 - 38408229
Alignment:
Q  29 tacataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggg 128  Q
    ||||||| ||||||||||||||   ||| |||||||||||||  ||||| |||||| |||||||| ||| |||| || ||||||||||||||| ||||||    
T  38408096 tacataatttaacgttttttgacccaaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttaggg 38408195  T
Q  129 gatcaaattgagacaatcaattaagttaagggac 162  Q
    || ||| |||| |||| |||||||||||||||||    
T  38408196 gaccaatttgatacaaacaattaagttaagggac 38408229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 41986087 - 41986250
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgttttttg-----agagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaa 105  Q
    ||||||||||||||||||||||||||||||| ||||||      | ||||| ||||| ||||||||| | ||||||   ||||||| ||||  | |||||    
T  41986087 cataggggaccaaattggtacataagttaaccttttttttttttatagaaactaacataaaggactaga-ctagtac--aagcaaa-catatag-accaa 41986181  T
Q  106 attggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    || |||||||||||||||||||||||||||||||||||| |||||||||||||| |||| | ||||||||    
T  41986182 at-ggtacaaattatagttaggggatcaaattgagacaaacaattaagttaaggaaccgggtgattgaat 41986250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 6271163 - 6271296
Alignment:
Q  29 tacataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggg 128  Q
    ||||||| ||||||||||||||   ||| |||||||||||||  |||||||||||  |||||||| ||  |||| || ||||||||||||||| ||||||    
T  6271163 tacataacttaacgttttttgacccaaactaacagaaaggaccgaaactagtaacggagcaaaacttaaaggacgaatttggtacaaattatatttaggg 6271262  T
Q  129 gatcaaattgagacaatcaattaagttaagggac 162  Q
    || ||| |||  | || |||||||||||||||||    
T  6271263 gaccaatttggtagaaacaattaagttaagggac 6271296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 38407554 - 38407450
Alignment:
Q  58 taacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaa 157  Q
    |||||||||||||  ||||| |||||| |||||||| ||| |||| || ||||||||||||||| |||||||| ||| |||  |||| | ||||||||||    
T  38407554 taacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttggtacaaaccattaagttaa 38407455  T
Q  158 gggac 162  Q
    |||||    
T  38407454 gggac 38407450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 460
Target Start/End: Original strand, 29882985 - 29883155
Alignment:
Q  290 gggtaagatttgtttcatgtctagggtgaaagagacattgacggtcaaccttacatccaaacagaccaacctaacatctagaaaaatggtgcttctctac 389  Q
    ||||||| |||||||| | || |||| |||| |||| |||| |||||||||| ||| || ||| |||||||| ||| | ||| |||  ||| |||  | |    
T  29882985 gggtaaggtttgtttcctctcaagggcgaaaaagactttgatggtcaaccttgcatgcagacacaccaacctgacacccagacaaaccgtgtttcgttgc 29883084  T
Q  390 agtgtggcaccatctccgttgactgttcatacaatctctaaaattataaagtagtctttttgtatgaaaga 460  Q
    || ||||||||||| || |||||||||||| ||||| ||||| ||  |||||||||| ||| |||||||||    
T  29883085 agcgtggcaccatcaccattgactgttcatgcaatccctaaatttccaaagtagtctctttttatgaaaga 29883155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 47373669 - 47373612
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||||||| ||||||||||| ||||  ||||||||||||||||| |||||||||||    
T  47373669 ttaacagaaacgactaaaactaataacggagcaaaacataggggactaaattggtaca 47373612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 162
Target Start/End: Complemental strand, 6270369 - 6270237
Alignment:
Q  30 acataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttagggg 129  Q
    |||||| ||||||||||||||   ||| ||||||||| |||  |||||||||||  ||||| || ||| |||| || ||||||||||||||| ||||| |    
T  6270369 acataacttaacgttttttgacccaaactaacagaaaagaccgaaactagtaacggagcaacacttagaggacgaatttggtacaaattatatttaggcg 6270270  T
Q  130 atcaaattgagacaatcaattaagttaagggac 162  Q
    | ||| ||   ||||  ||||||||||||||||    
T  6270269 accaatttagtacaaataattaagttaagggac 6270237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 544
Target Start/End: Complemental strand, 18501803 - 18501652
Alignment:
Q  397 caccatctccgttgactgttcatacaatctctaaaattataaagtagtctttttgtatgaaagacaaacgatagaaacaca---ttgtaaaagaaagtag 493  Q
    ||||||| || || ||| ||||||||||| ||  | || |||||||| |||||| |||||||||| |||||| ||||||||   ||||| ||| ||| ||    
T  18501803 caccatccccattaactattcatacaatcccttcatttctaaagtagcctttttttatgaaagaccaacgatggaaacacatttttgtagaaggaag-ag 18501705  T
Q  494 gaggag--agtgtaagatgatggaatgagaaattgtgaaggatttaagggtat 544  Q
    ||||||  ||||| |||||||||  |||||||| ||||||| || ||||||||    
T  18501704 gaggagaaagtgtgagatgatggtgtgagaaatggtgaaggtttgaagggtat 18501652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 41986058 - 41986108
Alignment:
Q  64 aaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||||||||| ||| |||  |||||||||||||||||||||||||||||    
T  41986058 aaaggactaaaattagcaacggagcaaaacataggggaccaaattggtaca 41986108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 6474422 - 6474479
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||| ||| |||||||||||  || | ||||||||||| |||||||||||||||||    
T  6474422 ttaacataaaagactaaaactaacaatagagcaaaacataagggaccaaattggtaca 6474479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 10257425 - 10257489
Alignment:
Q  98 gggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggac 162  Q
    ||||||||||||  |||  | ||||||| ||||||||||||||| ||| || |||||||||||||    
T  10257425 gggaccaaattgagacacttaatagttaagggatcaaattgagaaaataaaataagttaagggac 10257489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 9e-53; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 46003425 - 46003578
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgttttttg-agagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 109  Q
    ||||| ||||||||||||||||||||||||||||||||  ||||||| || ||||||||||||||||||||||  |||||||||| |||||| |||||||    
T  46003425 catagaggaccaaattggtacataagttaacgttttttttagagaaactaccagaaaggactaaaactagtaatgaagcaaaacaaaggggatcaaattg 46003524  T
Q  110 gtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggacc 163  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  46003525 gtacaaattttagttaggggaccaaattgagacaatcaattaagttaagggacc 46003578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 20538097 - 20537943
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgttttttg--agagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaatt 108  Q
    ||||||||||||||||||||||||| ||||||||||||   ||||||| ||| |||||||||||||||||||||  ||||||||||||||||||||||||    
T  20538097 cataggggaccaaattggtacataaattaacgtttttttttagagaaactaatagaaaggactaaaactagtaatgaagcaaaacataggggaccaaatt 20537998  T
Q  109 ggtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggacc 163  Q
    || |||||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  20537997 ggaacaaattatagttaggggatcaaattgataatatcaattaagttaagggacc 20537943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 43 - 164
Target Start/End: Original strand, 51663460 - 51663581
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||    
T  51663460 ttttttgagagaaactaacagaaatgactaaaactagtaacatagcaaaacatagaggaccaaattgctacaaattatagttaggggaccaaattgagac 51663559  T
Q  143 aatcaattaagttaagggaccg 164  Q
    ||||||||||||||||||||||    
T  51663560 aatcaattaagttaagggaccg 51663581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 51663420 - 51663266
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgtttttt-gagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 109  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||| || |||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  51663420 cataggggaccaaattagtacataagttaacgtttttttgagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggactaaattg 51663321  T
Q  110 gtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggaccg 164  Q
     |||||||||||||||| ||| || ||| | |||||||||||||||||| |||||    
T  51663320 atacaaattatagttagtggaccatattaaaacaatcaattaagttaagagaccg 51663266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 40244763 - 40244644
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacatagggga-ccaaattggtacaaattatagttaggggatcaaattgaga 141  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  40244763 tttttttagagaaactaacagaaatgactaaaactagtaacaaagcaaaacataggggaaccaaattggtacaaattatagttaagggaccaaattgaga 40244664  T
Q  142 caatcaattaagttaaggga 161  Q
    ||||||||||||||||||||    
T  40244663 caatcaattaagttaaggga 40244644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 43 - 175
Target Start/End: Original strand, 20538144 - 20538276
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||||||||||| ||||||||| ||||||||||||||||  ||||||||||||   || |||||| ||||||||||||||||||||||||||||||||    
T  20538144 ttttttgagagaaactaacagaaatgactaaaactagtaacggagcaaaacatagataactaaattgatacaaattatagttaggggatcaaattgagac 20538243  T
Q  143 aatcaattaagttaagggaccgagcgattgaat 175  Q
    |||||||||| |||| |||||| | ||||||||    
T  20538244 aatcaattaaattaaaggaccgggtgattgaat 20538276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 46003385 - 46003253
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||||||||||| ||||| |||||||||||||| |||||| | || ||||||| ||||||||||| |||||||||||||||||||| |||||| | ||    
T  46003385 ttttttgagagaaactaacaaaaaggactaaaacttgtaacagaacagaacatagaggaccaaattgatacaaattatagttaggggaccaaattaaaac 46003286  T
Q  143 aatcaattaagttaagggaccgagcgattgaat 175  Q
    ||||||||||||||| |||||| | ||||||||    
T  46003285 aatcaattaagttaaaggaccgggtgattgaat 46003253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 40364181 - 40364299
Alignment:
Q  56 attaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagtt 155  Q
    |||||||||||  |||||||||||||||  | |||||||||||| | ||||||||||||||||||||||||| || |||||||| |||||||||||||||    
T  40364181 attaacagaaatcactaaaactagtaacggaacaaaacataggg-atcaaattggtacaaattatagttaggagaccaaattgaaacaatcaattaagtt 40364279  T
Q  156 aagggaccgagcgattgaat 175  Q
    |||||||| || ||||||||    
T  40364280 aagggaccaagtgattgaat 40364299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 40364178 - 40364060
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagac 142  Q
    |||||||||||||| ||||| ||| ||||||||||| ||||  ||||||| | |||||| ||||||| ||||||||||| ||| |||| |||||| |||     
T  40364178 ttttttgagagaaactaacaaaaatgactaaaactaataacggagcaaaatacaggggatcaaattgatacaaattataattatgggaccaaattaagat 40364079  T
Q  143 aatcaattaagttaaggga 161  Q
    |||||||||||||||||||    
T  40364078 aatcaattaagttaaggga 40364060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 46003389 - 46003446
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  46003389 ttaacagaaaggactaaaactagtaacgaagcaaaacatagaggaccaaattggtaca 46003446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 542
Target Start/End: Complemental strand, 29583546 - 29583438
Alignment:
Q  439 agtagtctttttgtatgaaagacaaacgatagaaacaca---ttgtaaaagaaagtaggaggag--agtgtaagatgatggaatgagaaattgtgaagga 533  Q
    |||||||||||||| |||||||| |||||||||||||||   ||||| ||||||| ||||||||  ||||| ||||||||| |||||||||||| ||||     
T  29583546 agtagtctttttgtgtgaaagaccaacgatagaaacacattgttgtagaagaaagaaggaggagaaagtgtgagatgatgggatgagaaattgtaaaggt 29583447  T
Q  534 tttaagggt 542  Q
    || ||||||    
T  29583446 ttaaagggt 29583438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 334 - 501
Target Start/End: Complemental strand, 30857574 - 30857407
Alignment:
Q  334 tcaaccttacatccaaacagaccaacctaacatctagaaaaatggtgcttctctacagtgtggcaccatctccgttgactgttcatacaatctctaaaat 433  Q
    |||||||||||| |||| |||||||| | |||   ||| |||||  |||||| ||| |||||| |||||| | |||||| ||||||||||| | || |||    
T  30857574 tcaaccttacatacaaagagaccaacttgacactcagacaaatgacgcttctttacggtgtggaaccatcccagttgaccgttcatacaatttatataat 30857475  T
Q  434 tataaagtagtctttttgtatgaaagacaaacgatagaaacacattgtaaaagaaagtaggaggagag 501  Q
    | || | ||||||||||||||||||| | ||||||  ||||||||| || ||||||| |||| |||||    
T  30857474 tttagaatagtctttttgtatgaaaggccaacgatgaaaacacattatagaagaaaggaggatgagag 30857407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 20538133 - 20538076
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  20538133 ttaacaaaaatgactaaaactaataacaaagcaaaacataggggaccaaattggtaca 20538076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 40244873 - 40244930
Alignment:
Q  118 tatagttaggggatcaaattgagacaatcaattaagttaagggaccgagcgattgaat 175  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| | | ||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaagggacggggtgattgaat 40244930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 51663454 - 51663399
Alignment:
Q  59 aacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||||| |||||||||||| |||| ||||||||||||||||||||||| |||||    
T  51663454 aacagaaatgactaaaactaggaacagagcaaaacataggggaccaaattagtaca 51663399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 40244810 - 40244874
Alignment:
Q  16 gggaccaaattggtacataagttaacgttttttg--agagaaattaacagaaaggactaaaacta 78  Q
    |||| ||||||||| ||||||||||||||||||   ||||||| |||||||||||||||||||||    
T  40244810 gggatcaaattggtgcataagttaacgtttttttttagagaaactaacagaaaggactaaaacta 40244874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 11893365 - 11893323
Alignment:
Q  174 attacacaaaattttcaaacacctaatattaatttattaaaaa 216  Q
    ||||||||||| ||||||||||||||| |||||||||||||||    
T  11893365 attacacaaaactttcaaacacctaatgttaatttattaaaaa 11893323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 4143545 - 4143590
Alignment:
Q  175 ttacacaaaattttcaaacacctaatattaatttattaaaaatcta 220  Q
    |||||||||||| | ||||||||||| ||||||||||||| |||||    
T  4143545 ttacacaaaattgttaaacacctaatgttaatttattaaacatcta 4143590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 4159355 - 4159400
Alignment:
Q  175 ttacacaaaattttcaaacacctaatattaatttattaaaaatcta 220  Q
    |||||||||||| | ||||||||||| ||||||||||||| |||||    
T  4159355 ttacacaaaattgttaaacacctaatgttaatttattaaacatcta 4159400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 2225013 - 2224977
Alignment:
Q  34 aagttaacgttttttgagagaaattaacagaaaggac 70  Q
    ||||||||||||||||| | |||||||||||||||||    
T  2225013 aagttaacgttttttgataaaaattaacagaaaggac 2224977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 21249532 - 21249379
Alignment:
Q  11 cataggggaccaaattggtacataagttaacgtttttt-gagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 109  Q
    |||| |||||||||||||||||||||||||| |||||| |||||||| |||||||||||| ||||||||||||| |||||||||||||||||| ||||||    
T  21249532 cataagggaccaaattggtacataagttaacatttttttgagagaaactaacagaaaggattaaaactagtaacgaagcaaaacataggggactaaattg 21249433  T
Q  110 gtacaaattatagttaggggatcaaattgagacaatcaattaagttaagggacc 163  Q
    |||||| ||||| |||||||| |||||||||||||||||||| | |||||||||    
T  21249432 gtacaatttataattaggggaccaaattgagacaatcaattacggtaagggacc 21249379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 21249568 - 21249511
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtaca 114  Q
    |||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  21249568 ttaacaaaaaggactaaaactagtaacagagcaaaacataagggaccaaattggtaca 21249511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 532
Target Start/End: Original strand, 22415607 - 22415747
Alignment:
Q  397 caccatctccgttgactgttcatacaatctctaaaattataaagtagtctttttgtatgaaagacaaacgatagaaacaca---ttgtaaaagaaagtag 493  Q
    ||||||| || |||||  ||||||||||| || ||||| || |||   ||||||||||||||||| ||| || ||||||||   ||||| || |||| ||    
T  22415607 caccatccccattgaccattcatacaatccctgaaattctagagtttcctttttgtatgaaagaccaacaatggaaacacattgttgtagaataaagaag 22415706  T
Q  494 gag--gagagtgtaagatgatggaatgagaaattgtgaagg 532  Q
    |||  |||||||| | ||||||| |||||||||||||||||    
T  22415707 gaggagagagtgtgacatgatgggatgagaaattgtgaagg 22415747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 21249572 - 21249625
Alignment:
Q  43 ttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacata 96  Q
    |||||| ||||||| ||||||||||||||||||||| ||||  |||||||||||    
T  21249572 tttttttagagaaactaacagaaaggactaaaactaataacggagcaaaacata 21249625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 459
Target Start/End: Complemental strand, 18180447 - 18180286
Alignment:
Q  298 tttgtttcatgtctagggtgaaagagacattgacggtcaaccttacatccaaacagaccaacctaacatctagaaaaatggtgcttctctacagtgtggc 397  Q
    ||||||||||||||||||  |||||||| |||| | ||||||||||| | | ||||| |||||| ||| | | | |||||||||    |||||  |||||    
T  18180447 tttgtttcatgtctagggcaaaagagactttgatgatcaaccttacacctagacagatcaaccttacacccaaacaaatggtgccaacctacatagtggc 18180348  T
Q  398 accatctccgttgactgttcatacaatctctaaaattataaagtagtctttttgtatgaaag 459  Q
    ||||| | | || ||  |||||||||||  ||||||  || ||||  |||||||||||||||    
T  18180347 accatgttcttttaccattcatacaatccataaaatactagagtaacctttttgtatgaaag 18180286  T

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Target: scaffold0060 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 22912 - 23047
Alignment:
Q  40 acgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattga 139  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||| ||| |||||||||||||||||||||||||||| |||||| |    
T  22912 acgttttttgagagaaactaacagaaaggactaaaactagtaacggagcaaaacatagaggatcaaattggtacaaattatagttaggggaccaaattaa 23011  T
Q  140 gacaatcaattaagttaagggaccgagcgattgaat 175  Q
    ||||||||||||||||||||||||| | ||||||||    
T  23012 gacaatcaattaagttaagggaccgggtgattgaat 23047  T

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Target: scaffold0781 (Bit Score: 91; Significance: 8e-44; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 5260 - 5366
Alignment:
Q  58 taacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaattgagacaatcaattaagttaa 157  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5260 taacataaatgactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaa 5359  T
Q  158 gggaccg 164  Q
    |||||||    
T  5360 gggaccg 5366  T

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Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 108118 - 108047
Alignment:
Q  57 ttaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggg 128  Q
    |||||| |||||||||||||||||||   ||||||||| || ||||||||||| |||||||||| |||||||    
T  108118 ttaacaaaaaggactaaaactagtaatggagcaaaacacagaggaccaaattgatacaaattatggttaggg 108047  T

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Target: scaffold0036 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 163
Target Start/End: Original strand, 61025 - 61151
Alignment:
Q  37 ttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggatcaaat 136  Q
    |||||||||||||    ||| |||||||||||||  |||||  ||||  |||||||| ||| |||| || ||||||||||||| | ||| |||| ||| |    
T  61025 ttaacgttttttgcccaaaactaacagaaaggacctaaactgataacggagcaaaacttagaggacgaatttggtacaaattaaatttaagggaccaatt 61124  T
Q  137 tgagacaatcaattaagttaagggacc 163  Q
    ||  |||| ||||||||||||||||||    
T  61125 tggtacaaacaattaagttaagggacc 61151  T

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Target: scaffold0036; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 60910 - 60777
Alignment:
Q  30 acataagttaacgttttttgagagaaattaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattggtacaaattatagttagggg 129  Q
    |||||| ||||||||||||||   ||| |||||||||||||  |||||| |||   |||||||| | | ||||  | ||||||||||||| | ||| |||    
T  60910 acataacttaacgttttttgaccaaaactaacagaaaggacctaaactattaatggagcaaaactttgaggactcatttggtacaaattaaatttaaggg 60811  T
Q  130 atcaaattgagacaatcaattaagttaagggacc 163  Q
    | ||| || | ||||  |||||||||||||||||    
T  60810 accaatttaatacaaataattaagttaagggacc 60777  T

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Target: scaffold0512 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 481
Target Start/End: Complemental strand, 11714 - 11633
Alignment:
Q  400 catctccgttgactgttcatacaatctctaaaattataaagtagtctttttgtatgaaagacaaacgatagaaacacattgt 481  Q
    ||||||| ||||| ||||||||||||  |||| || ||| ||||||| ||| ||||||||   |||||| ||||||||||||    
T  11714 catctccattgaccgttcatacaatccataaatttttaacgtagtctctttttatgaaaggttaacgatggaaacacattgt 11633  T

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