View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11596_low_10 (Length: 310)
Name: NF11596_low_10
Description: NF11596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11596_low_10 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 3076593 - 3076294
Alignment:
| Q |
11 |
atggacatcacaaaaccaattacaaacacactttgtaacatacacttgagtgtatttttagtgagaattcttgttccattttagagagtattttaggaga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3076593 |
atggacatcacaaaaccaattacaaacacactttgtaacatacacttgagtgtatttttagtaagaattcttgttccattttagagagtattttaggaga |
3076494 |
T |
|
| Q |
111 |
tattgagagaaaattttgtcctttgtcctcatcactataagaggacttgttgtactcnnnnnnnnnacatagtggaactttgctctcgatcgcccgtggt |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
3076493 |
tattgagagaaaattttgtcatttgtcctcatcactataagaagacttgttgtactcttttcttttatatagtggaactttgctctcaatcgcccgtggt |
3076394 |
T |
|
| Q |
211 |
tttttacttctcatattgaggagttttccacgtaaatcttgtgtgttatttctcttgttattttacttacttctctctaattctcaatttcatagatcct |
310 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
3076393 |
tttttacttctcatatttaggagttttccatgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaatttcattgatcct |
3076294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 3073068 - 3072781
Alignment:
| Q |
11 |
atggacatcacaaaaccaattacaaacacactttgtaacatacacttgagtgtatttttagtgagaattcttgttccattttagagagtattttaggaga |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3073068 |
atggacattacaaaaccaattacaaacacactttgtaacatacacttgagtgtatttttagtgagaattcttgttccattttcgagagtattttaggaga |
3072969 |
T |
|
| Q |
111 |
tattgagagaaaattttgtcctttgtcctcatcactataagaggacttgttgtactcnnnnnnnnnacatagtggaactttgctctcgatcgcccgtggt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3072968 |
tattgagagaaaattttgtcctttgtcctcatcactataagaggacttgttgtactcttttcttttacatagtggaactttgctctcgatcgcccgtggt |
3072869 |
T |
|
| Q |
211 |
tttttacttctcatattgaggagttttccacgtaaatcttgtgtgttatttctcttgttattttacttacttctctctaattctcaatttcatagatcct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3072868 |
tttttacttctcatattgaggagttttccacgtaaatcttgtg------------tgttattttacttacttctctttaattctcaatttcatagatcct |
3072781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 308
Target Start/End: Original strand, 29470749 - 29471040
Alignment:
| Q |
17 |
atcacaaaaccaattacaaacacactttgtaacatacacttgagtgtatttttagtgagaattcttgttccattttagagagtattttaggagatattga |
116 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29470749 |
atcacataaccaattacaaacacactttgtaacatacacttaagtgtatttttggtgagaattcttgttccattttagagagtattttaggagatattga |
29470848 |
T |
|
| Q |
117 |
gagaaaattttgtcctttgtcctcatcactataagaggacttgttgtactcnnnnnnnnnacatagtggaactttgctctcgatcgcccgtggtttttta |
216 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29470849 |
gagaaaatattgtcctttgtcctcattactataagaggacttgctatactcttttcttttacatagtggaactttgctcttgatcgcccgtggtttttta |
29470948 |
T |
|
| Q |
217 |
cttctcatattgaggagttttccacgtaaatcttgtgtgttatttctcttgttattttacttacttctctctaattctcaatttcatagatc |
308 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
29470949 |
gttctcatattgaggagttttccatgtaaatcttgtgtgttttttctcttgttattttacttacttctctttaattctcaatttcatcgatc |
29471040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 22 - 298
Target Start/End: Complemental strand, 8565113 - 8564836
Alignment:
| Q |
22 |
aaaaccaattacaaacacactttgtaacatacacttgagtgtatttttagtgagaattcttgttccattttagagagtattttaggagatattgagagaa |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
8565113 |
aaaaccaattacaaacacactttgtaacatacacttgggtgtattttttgtgagaattcttgttccattttagagagtattttaggaaatattgagtgaa |
8565014 |
T |
|
| Q |
122 |
aattttgtcctttgtcctcatcactataagaggacttgttgtactcnnnnnnnnnacatagtggaactttgctctcgatcgcccgtggttttttacttct |
221 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || || || ||||||||||||||| |
|
|
| T |
8565013 |
aatattatcctttgtcctcatcactataagaggacttgttgtactcttttcttttacatagtggaactttattcgtgaccgtccatggttttttacttct |
8564914 |
T |
|
| Q |
222 |
catattgaggagttttccacgtaaatcttgtgtgtt-atttctcttgttattttacttacttctctctaattctcaat |
298 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8564913 |
catattgaggagttttcaacgtaaatcttgtgtgttaatttctcttgttattttacttacttctctttaattctcaat |
8564836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 37 - 298
Target Start/End: Original strand, 15113959 - 15114214
Alignment:
| Q |
37 |
cacactttgtaacatacacttgagtgtatttttagtgagaattcttgttccattttagagagtattttaggagatattgagagaaaattttgtcctttgt |
136 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
15113959 |
cacactttgtaacatacacttgagtgtacttttggtgagaattcttgttccatttgagagagtattttaggagatattgggagaaaatattgtcctttgt |
15114058 |
T |
|
| Q |
137 |
cctcatcactataagaggacttgttgtactcnnnnnnnnnacatagtggaactttgctctcgatcgcccgtggttttttacttctcatattgaggagttt |
236 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15114059 |
cctcattactataagaggacttgttgtactcttttcttttacatagtggaactttgctcgtgatcgcccgtggttttttacttctcatattgag------ |
15114152 |
T |
|
| Q |
237 |
tccacgtaaatcttgtgtgttatttctcttgttattttacttacttctctctaattctcaat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15114153 |
tccacgtaaatcttgtgtgttatttctcttgttattttacttacttctctttaattctcaat |
15114214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 34 - 310
Target Start/End: Complemental strand, 15241792 - 15241518
Alignment:
| Q |
34 |
aaacacactttgtaacatacacttgagtgtatttttagtgagaattcttgttccattttagagagtattttaggagatattgagagaaaattttgtcctt |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
15241792 |
aaacacactttgtaacatacacttgagtgtattttttgtgagaattcttgttccattttagagagtattttaggagatattaagagaaaatattgtcctt |
15241693 |
T |
|
| Q |
134 |
tgtcctcatcactataagaggacttgttgtactcnnnnnnnnnacatagtggaactttgctctcgatcgcccgtggttttttacttctcatattgaggag |
233 |
Q |
| |
|
||||||||| |||| ||||||| || ||||||| ||||||||||||||||||| || | ||| |||||||| ||||||||||||||||| |
|
|
| T |
15241692 |
tgtcctcattactacaagaggatttattgtacttttttcttttacatagtggaactttgctcgtgaccacccatggttttt--cttctcatattgaggag |
15241595 |
T |
|
| Q |
234 |
ttttccacgtaaatcttgtgtgttatttctcttgttattttacttacttctctctaattctcaatttcatagatcct |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||| ||| |||||| |
|
|
| T |
15241594 |
ttttccacgtaaatcttgtgtgttatttctcttattattttacttacttctctttgattctcaattgcatcgatcct |
15241518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University