View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11596_low_11 (Length: 294)
Name: NF11596_low_11
Description: NF11596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11596_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 3 - 271
Target Start/End: Original strand, 43224891 - 43225153
Alignment:
| Q |
3 |
agagcacagtatgagagaaaaaatctgcactatagcatggaacaattccaaaggccatgaaaatccaaacatacataccttgaacaagcctaatacctca |
102 |
Q |
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| T |
43224891 |
agagcacagtaagagagaaaaaatctgcacta--gcatggaacaattccaaaggccatgaaaatccaaacatacataccttgaacaagcctaatacctca |
43224988 |
T |
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| Q |
103 |
aaacaatgcagcaaccaatcaacacacaattgattttctgtaacaatttatttattaagatactaatgtaaggaagatgagttaccacatgagttaatta |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||| ||| |
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| T |
43224989 |
aaacaatgcagcaaccaatcaacacacaattgattttctgtaacaatttatttattcagatgctaatgtaaggaagatgagttacgacatgag----tta |
43225084 |
T |
|
| Q |
203 |
aataaatataagaatgaatatgcagcttttaattaagagaaaaggtaaaggatttgggagagtggagga |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43225085 |
aataaatataagaatgaatatgcagcttttaattaagagaaaaggtaaaggatttgggagaatggagga |
43225153 |
T |
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