View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11596_low_13 (Length: 261)
Name: NF11596_low_13
Description: NF11596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11596_low_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 11665761 - 11665513
Alignment:
| Q |
14 |
cataggaagcagacttagccaaatttctaccttcaagaattttacgccactttacctctactcaaaatataaagcaagaaacgatacggg--cagtagac |
111 |
Q |
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| T |
11665761 |
catagcaagcagacttagccaaatttctaccttcaaaaattttacgccactt-acctctactcaaaatataaagcaagaaacgaaacgggggcagtagac |
11665663 |
T |
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| Q |
112 |
caccactatattttacctccttaggactctacaccttaatttcgtcaccccaacataaatatttagtggaataattcttggtcagattttacttaccttt |
211 |
Q |
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| T |
11665662 |
caccactatattttacctccttaggactctacaccttaacttcgtcaccccaacataaatatttagtggaataattcttggtcagattttacttaccttt |
11665563 |
T |
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| Q |
212 |
aagatgaattataaattaccagaaccatgttgagtgcgatttaaaatctc |
261 |
Q |
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| T |
11665562 |
aagatgaattataaattatcagaatcatgttgaatgcgacttaaaatctc |
11665513 |
T |
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