View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11596_low_14 (Length: 251)
Name: NF11596_low_14
Description: NF11596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11596_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 26786070 - 26785834
Alignment:
| Q |
13 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
112 |
Q |
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| T |
26786070 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
26785971 |
T |
|
| Q |
113 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgatttcctctgccaaaccattcctttccttgtcaataatcctgaaattggtctcgttc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785970 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgatttcctctgccaaaccattcctttccttgtcaataatcctgaaattggtctcgttc |
26785871 |
T |
|
| Q |
213 |
aggctcgctggaagtttggtaatttctctttttccct |
249 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
26785870 |
aggctcgctggaagtttggtaattactctttttccct |
26785834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 26822711 - 26822481
Alignment:
| Q |
13 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
112 |
Q |
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| T |
26822711 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
26822612 |
T |
|
| Q |
113 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgatttcctctgccaaaccattcctttccttgtcaataatcctgaaattggtctcgttc |
212 |
Q |
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| T |
26822611 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgactttctccgccgaacgatcccttttcttgtcaataatcctgaaattggtctcgttc |
26822512 |
T |
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| Q |
213 |
aggctcgctggaagtttggtaatttctcttt |
243 |
Q |
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| T |
26822511 |
aggctcgctggaagtttggtaattactcttt |
26822481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 26791810 - 26791590
Alignment:
| Q |
13 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26791810 |
caaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaatgt |
26791711 |
T |
|
| Q |
113 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgatttcctctgccaaaccattcctttccttgtcaataatcctgaaattggtctcgttc |
212 |
Q |
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| T |
26791710 |
gaatatgttgccatctttgatgctgattttcaacctgaacctgattttctcctccgaaccatcccttttcttgtcaataatcctgagattggtctcgttc |
26791611 |
T |
|
| Q |
213 |
aggctcgctggaagtttggta |
233 |
Q |
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| T |
26791610 |
aagctcgctggaagtttggta |
26791590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 238
Target Start/End: Complemental strand, 26832795 - 26832563
Alignment:
| Q |
6 |
ggagaagcaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcct |
105 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||| |||| |
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| T |
26832795 |
ggagaagcaaaggtgtgaatataaagtatgaagttagggacaatagaaatggttacaaagcaggtgcattaaaggagggaatgaaacatagctatgtgaa |
26832696 |
T |
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| Q |
106 |
acaatgtgaatatgttgccatctttgatgctgattttcaacctgaacctgatttcctctgccaaaccattcctttccttgtcaataatcctgaaattggt |
205 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| || || | |||||| ||||||||||| ||||||||||| |||||| |
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| T |
26832695 |
acaatgtgattatgttgctatctttgatgctgattttcaaccagaacctgattttctttggcgaaccatccctttccttgttaataatcctgatattggt |
26832596 |
T |
|
| Q |
206 |
ctcgttcaggctcgctggaagtttggtaatttc |
238 |
Q |
| |
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|| |||||||||||||||||||||||||||||| |
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| T |
26832595 |
cttgttcaggctcgctggaagtttggtaatttc |
26832563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 41546211 - 41546355
Alignment:
| Q |
6 |
ggagaagcaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcct |
105 |
Q |
| |
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||||||| ||||| | |||||||||||||| | ||||| || |||||||| ||||||||||||||||| || || |||||||| ||||| ||||| |
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| T |
41546211 |
ggagaagaaaaggcataaacataaagtatgagataagggaaaatagaaatggttacaaagctggtgctcttaaagaaggaatgaagcatagctatgtcaa |
41546310 |
T |
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| Q |
106 |
acaatgtgaatatgttgccatctttgatgctgattttcaacctga |
150 |
Q |
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| T |
41546311 |
actttgtgactatgttgccatctttgatgctgattttcaacctga |
41546355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 41917439 - 41917588
Alignment:
| Q |
10 |
aagcaaaggtgtgaacataaagtatgaagttagggacaacagaaatgggtacaaagctggtgctctaaaggagggaatgaaacatagtcatgtcctacaa |
109 |
Q |
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||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| || ||| |||| || |||||||| ||||| |||| ||| |
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| T |
41917439 |
aagcaaaggagtgaatataaagtatgaagttagggacaatagaaatggatacaaagcaggggctttaaaagaaggaatgaagcatagctatgtgaagcaa |
41917538 |
T |
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| Q |
110 |
tgtgaatatgttgccatctttgatgctgattttcaacctgaacctgattt |
159 |
Q |
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||||| ||||||| || |||||||||||||||||||| || |||||||| |
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| T |
41917539 |
tgtgatcatgttgcaatatttgatgctgattttcaaccagagcctgattt |
41917588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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