View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11596_low_17 (Length: 226)
Name: NF11596_low_17
Description: NF11596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11596_low_17 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 21776467 - 21776692
Alignment:
| Q |
1 |
tgggttatgaccaatccactctcactctcttaagcttctacaaagacttaggttcttgcataggaattctctcaggcctactcaatgaaatcacacctcc |
100 |
Q |
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| T |
21776467 |
tgggttatgaccaatccactctcactctcttaagcttctacaaggacttaggttcttgcataggaattctctcaggtctactcaatgaaatcacacctcc |
21776566 |
T |
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| Q |
101 |
ttgggttgtcttaacaattggtggtgttctcaacttttttggctatttcatgatttggcttgcagtcacaagaaaaaactcgaaaccgcaaatatggaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21776567 |
atgggttgtcttaacaattggtggtgttctcaacttttttggctatttcatgatttggcttgcagtcacaagaaaaatctcgaaaccgcaaatatggaat |
21776666 |
T |
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| Q |
201 |
atgtgcttatacacattcattggagc |
226 |
Q |
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| T |
21776667 |
atgtgcttatacacattcattggagc |
21776692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 19713933 - 19713708
Alignment:
| Q |
1 |
tgggttatgaccaatccactctcactctcttaagcttctacaaagacttaggttcttgcataggaattctctcaggcctactcaatgaaatcacacctcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||||| || ||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19713933 |
tgggttatgaccaatccactctcactctcttaagcttcttcaaggacttgggatctaacataggcattctctcaggcctactcaatgaaatcacacctcc |
19713834 |
T |
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| Q |
101 |
ttgggttgtcttaacaattggtggtgttctcaacttttttggctatttcatgatttggcttgcagtcacaagaaaaaactcgaaaccgcaaatatggaat |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| | |||||||||| |
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| T |
19713833 |
ttgggttgtcttaacaattggtggtcttctcaacttttttggctatttcatgatttggcttgcagtcacaagaaaaatcccaaaacctccaatatggaat |
19713734 |
T |
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| Q |
201 |
atgtgcttatacacattcattggagc |
226 |
Q |
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| T |
19713733 |
atgtgcttatacatatttattggagc |
19713708 |
T |
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