View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11596_low_2 (Length: 679)

Name: NF11596_low_2
Description: NF11596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11596_low_2
NF11596_low_2
[»] chr8 (16 HSPs)
chr8 (53-610)||(25488987-25489547)
chr8 (56-349)||(25385112-25385413)
chr8 (451-610)||(24913747-24913915)
chr8 (451-610)||(25646202-25646369)
chr8 (486-610)||(25603826-25603951)
chr8 (154-380)||(25603162-25603397)
chr8 (513-610)||(25799543-25799640)
chr8 (53-128)||(25603027-25603102)
chr8 (540-610)||(25321934-25322004)
chr8 (53-126)||(25799402-25799475)
chr8 (168-250)||(25799465-25799547)
chr8 (233-293)||(25321366-25321426)
chr8 (464-559)||(25569119-25569214)
chr8 (551-610)||(25694637-25694699)
chr8 (480-525)||(25321889-25321934)
chr8 (424-452)||(25385414-25385442)
[»] scaffold0070 (5 HSPs)
scaffold0070 (451-610)||(17790-17951)
scaffold0070 (53-136)||(18540-18623)
scaffold0070 (53-126)||(38146-38219)
scaffold0070 (211-293)||(18458-18539)
scaffold0070 (424-452)||(18361-18389)
[»] scaffold0526 (1 HSPs)
scaffold0526 (454-499)||(11146-11191)
[»] chr3 (1 HSPs)
chr3 (454-499)||(11971234-11971279)


Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 53 - 610
Target Start/End: Original strand, 25488987 - 25489547
Alignment:
Q  53 catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagttcttacctcttaaatag 152  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25488987 catatgaggaattgtttaatgcaaaactcagttttcttataaccaagaatcaaaataaatcctttgtctcatcttactatagttcttacctcttaaatag 25489086  T
Q  153 taacttatactgttcttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaactagaatcgtccaaagg 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489087 taacttatactgttcttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaactagaatcgtccaaagg 25489186  T
Q  253 tgaatggaccaacatgcatttgaaatttactttttatttgtgaatttttgtaaaagatgtcaagagacaaaagcagcaacaactattcatgatatatcat 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489187 tgaatggaccaacatgcatttgaaatttactttttatttgtgaatttttgtaaaagatgtcaagagacaaaagcagcaacaactattcatgatatatcat 25489286  T
Q  353 caaagagtttaattactggaagcaattgnnnnnnnnnaaacatcttttttgcttgttgatttcgggcaaacaatatatttttgtacttttgacacaagat 452  Q
    |||| |||||||||||||||||||||||         ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25489287 caaatagtttaattactggaagcaattgtttttttttaaacatcttttttgcttgttgatttcgtgcaaacaatatatttttgtacttttgacacaagat 25489386  T
Q  453 tatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaaccaaaaactgattggaaagttcagtaatagaagatatttt 552  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||    
T  25489387 tatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaatcaaaaactgattagaaagttcagtaatagaagatctttt 25489486  T
Q  553 cttcccattcttacacaatgagtcaagactctcactac---tctcctccaaatactgcacc 610  Q
    ||||| ||||||||||||||||||||||| || |||||   ||||||||||| ||||||||    
T  25489487 cttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25489547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 56 - 349
Target Start/End: Original strand, 25385112 - 25385413
Alignment:
Q  56 atgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagttcttac-------ctcttaa 148  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  25385112 atgaggaattgtttaatgcaaaactcagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagttcttatatattatctcttaa 25385211  T
Q  149 atagtaacttatactgttcttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaactagaatcgtcca 248  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||| | |||| |||||| ||||    
T  25385212 atagaaacttatactgttcttgtctcatcaaacagattttaagataaattcttagccaaaactgtaaaatcagtaattatgcaaaaaccagaatcatcca 25385311  T
Q  249 aaggtgaatggaccaacatgcatttgaaatttactttttatttgtgaatttttgtaaaaga--tgtcaagagacaaaagcagcaacaactattcatgata 346  Q
    ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |  | ||| |||||||| ||||||||||| || |||||||    
T  25385312 aaggtgaatggaccaccatgcatttgaaatttagtttttctttgtgaatttttgtaaaaaaaatttca-gagacaaaggcagcaacaacaatgcatgata 25385410  T
Q  347 tat 349  Q
    |||    
T  25385411 tat 25385413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 451 - 610
Target Start/End: Complemental strand, 24913915 - 24913747
Alignment:
Q  451 attatgtagcaacctagtaagtagac-----accacctgatatgacataaaagacagaaatattcaaccaaaaactgattggaaagttcagtaatagaag 545  Q
    ||||||||||||||||||||||||||     |||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24913915 attatgtagcaacctagtaagtagactagacaccacctgctataacataaaagacagaaatattcaaccaaaaactgattagaaagttcagtaatagaag 24913816  T
Q  546 atattttcttcccattcttacacaatgag----tcaagactctcactactctcctccaaatactgcacc 610  Q
    || ||||||||||||||||||||||||||    ||||||| ||||||||| ||||||||| ||||||||    
T  24913815 atcttttcttcccattcttacacaatgagtcaatcaagacgctcactactttcctccaaagactgcacc 24913747  T

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Target: chr8; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 451 - 610
Target Start/End: Original strand, 25646202 - 25646369
Alignment:
Q  451 attatgtagcaacctagtaagtaga-----caccacctgatatgacataaaagacagaaatattcaaccaaaaactgattggaaagttcagtaatagaag 545  Q
    |||||||||||||||||||||||||     ||||||||| ||| |||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||    
T  25646202 attatgtagcaacctagtaagtagactagacaccacctgctataacataaaagacagaaatattcaactaaaaactgattagaaggttcagtaatagaag 25646301  T
Q  546 atattttcttcccattcttacacaatgagtcaagactctcactac---tctcctccaaatactgcacc 610  Q
    || ||||||||||||||||||||||||||||||||| || |||||   ||||||||||| ||||||||    
T  25646302 atcttttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25646369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 486 - 610
Target Start/End: Original strand, 25603826 - 25603951
Alignment:
Q  486 tatgacataaaagacagaaatattcaaccaaaa-actgattggaaagttcagtaatagaagatattttcttcccattcttacacaatgagtcaagactct 584  Q
    ||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||    
T  25603826 tatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaatataagatcttttcttcccattcgtacacaatgagtcaagaccct 25603925  T
Q  585 cactactctcctccaaatactgcacc 610  Q
    ||||||||||||||||| ||||||||    
T  25603926 cactactctcctccaaagactgcacc 25603951  T

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Target: chr8; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 154 - 380
Target Start/End: Original strand, 25603162 - 25603397
Alignment:
Q  154 aacttatactgttcttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaactagaatcgtccaaaggt 253  Q
    |||||||||  ||||||| |||||||||  |||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||| |||||| |||    
T  25603162 aacttatacaattcttgtttcatcaaaccaattttaagatgaattctcaaccaaaactgaaaaacctgcaattatgcagaaactagaatagtccaatggt 25603261  T
Q  254 gaatggaccaacatgcatttgaaatttact----------ttttatttgtgaatttttgtaaaagatgtcaagagacaaaagcagcaacaactattcatg 343  Q
    ||||||||||| |||||||  ||||||| |           |||||| | ||||||||||||| ||||||  |||||||| || | |||||| || ||||    
T  25603262 gaatggaccaatatgcattacaaatttagtgaatttggacatttattagcgaatttttgtaaacgatgtc-ggagacaaaggccggaacaacaatgcatg 25603360  T
Q  344 atatatcatcaaagagtttaattactggaagcaattg 380  Q
    ||||||||||  |||||||||||||| |||| |||||    
T  25603361 atatatcatcttagagtttaattactagaagaaattg 25603397  T

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Target: chr8; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 513 - 610
Target Start/End: Original strand, 25799543 - 25799640
Alignment:
Q  513 ccaaaaactgattggaaagttcagtaatagaagatattttcttcccattcttacacaatgagtcaagactctcactactctcctccaaatactgcacc 610  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||    
T  25799543 ccaaaaactgattacaaagttcagtaatagaagatcttttcttcccattcttacacaatgattcaagaccctcactactctcctccaaagactgcacc 25799640  T

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Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 25603027 - 25603102
Alignment:
Q  53 catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatctta 128  Q
    |||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||| ||||||||||    
T  25603027 catatgaggaattgtttaatgcaaaagccagtattcttgcaaccaagaataaaaataaatcctttctctcatctta 25603102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 540 - 610
Target Start/End: Original strand, 25321934 - 25322004
Alignment:
Q  540 tagaagatattttcttcccattcttacacaatgagtcaagactctcactactctcctccaaatactgcacc 610  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  25321934 tagaagatcttttcttcccattcttacacaatgagtcaagaccctcactactctcctccaaagactgcacc 25322004  T

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Target: chr8; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 25799402 - 25799475
Alignment:
Q  53 catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatct 126  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  25799402 catatgatgaattgtttaatacaaaagtcagttttcttataaccatgaataaaaataaatcctttgtctcatct 25799475  T

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Target: chr8; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 25799465 - 25799547
Alignment:
Q  168 ttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaactagaatcgtccaaa 250  Q
    |||||||||| ||| |||||||||||| ||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||    
T  25799465 ttgtctcatctaactgattttaagatacattctcagcaaaaactgaaaaatcagcaattatgcagaaactagaatcatccaaa 25799547  T

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Target: chr8; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 25321366 - 25321426
Alignment:
Q  233 aaactagaatcgtccaaaggtgaatggaccaacatgcatttgaaatttactttttatttgt 293  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25321366 aaactagaatcatccaaaggtgaatggaccaacatgcatttgaaatttagtttttatttgt 25321426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 464 - 559
Target Start/End: Original strand, 25569119 - 25569214
Alignment:
Q  464 ctagtaagtagacaccacctgatatgacataaaagacagaaatattcaaccaaaaactgattggaaagttcagtaatagaagatattttcttccca 559  Q
    ||||||| ||||||||||||| ||||||| | |||| | |||||| |||| ||||| ||||| | ||||||||||||||||||| ||||| |||||    
T  25569119 ctagtaactagacaccacctggtatgacagagaagaaataaatatgcaacaaaaaaatgattagcaagttcagtaatagaagatcttttcatccca 25569214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 551 - 610
Target Start/End: Original strand, 25694637 - 25694699
Alignment:
Q  551 ttcttcccattcttacacaatgagtcaagactctcactac---tctcctccaaatactgcacc 610  Q
    ||||||||||||||||||||||||||||||| || |||||   ||||||||||| ||||||||    
T  25694637 ttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcacc 25694699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 480 - 525
Target Start/End: Original strand, 25321889 - 25321934
Alignment:
Q  480 acctgatatgacataaaagacagaaatattcaaccaaaaactgatt 525  Q
    ||||| ||||||||||||| |||| |||||||||||||||||||||    
T  25321889 acctgctatgacataaaaggcagatatattcaaccaaaaactgatt 25321934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 424 - 452
Target Start/End: Original strand, 25385414 - 25385442
Alignment:
Q  424 aatatatttttgtacttttgacacaagat 452  Q
    |||||||||||||||||||||||||||||    
T  25385414 aatatatttttgtacttttgacacaagat 25385442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 92; Significance: 2e-44; HSPs: 5)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 451 - 610
Target Start/End: Complemental strand, 17951 - 17790
Alignment:
Q  451 attatgtagcaacctagtaagtagacaccacctgatatgacataaaagacagaaatattcaaccaaaaactgattggaaagttcagtaatagaagatatt 550  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||| | ||||||||||||||| |||||||||||||||||  || ||    
T  17951 attatgtagcaacctagtaagtagacaccacctgctataacataaaagacaaaaataattaaccaaaaactgattagaaagttcagtaataga--atctt 17854  T
Q  551 ttcttcccattcttacacaatgag----tcaagactctcactactctcctccaaatactgcacc 610  Q
    ||||||||||||||||||||||||    ||||||| ||||||||| ||||||||  ||||||||    
T  17853 ttcttcccattcttacacaatgagtcaatcaagaccctcactactttcctccaaggactgcacc 17790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 18623 - 18540
Alignment:
Q  53 catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagtt 136  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18623 catatgaagaattgtgtaatgcaaaagccagttttcttataaccatgaataaaaataaatcctttgtctcatcttactatagtt 18540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 53 - 126
Target Start/End: Complemental strand, 38219 - 38146
Alignment:
Q  53 catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatct 126  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  38219 catatgatgaattgtttaatgcaaaagtcagttttcttataaccatgaataaaaataaatcctttgtctcatct 38146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 18539 - 18458
Alignment:
Q  211 tgaaaaaccagcaattatgtagaaactagaatcgtccaaaggtgaatggaccaacatgcatttgaaatttactttttatttgt 293  Q
    ||||||| ||||||||||| | |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  18539 tgaaaaatcagcaattatgca-aaactaaaatcatccaaaggtgaatggaccaacatgcatttgaaatttagtttttctttgt 18458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 424 - 452
Target Start/End: Complemental strand, 18389 - 18361
Alignment:
Q  424 aatatatttttgtacttttgacacaagat 452  Q
    |||||||||||||||||||||||||||||    
T  18389 aatatatttttgtacttttgacacaagat 18361  T

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Target: scaffold0526 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 499
Target Start/End: Complemental strand, 11191 - 11146
Alignment:
Q  454 atgtagcaacctagtaagtagacaccacctgatatgacataaaaga 499  Q
    ||||||||| |||||||||||||||||| || ||||||| ||||||    
T  11191 atgtagcaaactagtaagtagacaccacatggtatgacacaaaaga 11146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 499
Target Start/End: Complemental strand, 11971279 - 11971234
Alignment:
Q  454 atgtagcaacctagtaagtagacaccacctgatatgacataaaaga 499  Q
    ||||||||| |||||||||||||||||| || ||||||| ||||||    
T  11971279 atgtagcaaactagtaagtagacaccacatggtatgacacaaaaga 11971234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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