View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11596_low_3 (Length: 569)
Name: NF11596_low_3
Description: NF11596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11596_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 288 - 565
Target Start/End: Original strand, 26785569 - 26785845
Alignment:
| Q |
288 |
caaatatgagataaaaaatctaacattttcaaaacaaataaaatctacactgcggtgtagattttattgtttcacttttaagtagctatatgtaattttg |
387 |
Q |
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| T |
26785569 |
caaatatgagatacaaaatctaacattttcaaaacaaataaaatctacaccgcagtgtagattttattgtttcacttttaagtagctatgtgtaattttg |
26785668 |
T |
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| Q |
388 |
tgttcatggcaaatttgtccgaatcacgtttgtcaccatgttttagaaaaatatattttaaaacttcaacaaaatcacaattaatgttaattcaagcatg |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26785669 |
tgttcatggcaaatttgtccgaatcacgtttgtcaccatgttttagaaaaatatcttttaaaacttcaacaaaatcagaattaatgttaattcaagcatg |
26785768 |
T |
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| Q |
488 |
cactaaatatatcaccgctatatgctatgccgcaacttataggttaatgcgattctagaagaattaagggaaaaagag |
565 |
Q |
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| T |
26785769 |
cactaaatatatcaccgctatatgctatgccgcaacttataggttaatgcgattctagaagaatt-agggaaaaagag |
26785845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 26785318 - 26785512
Alignment:
| Q |
1 |
ttgcaatatgctacggttgaagaactgaagacaattgaaaaaatgaaacttggtacttgactaagttattatagaggaagaagaaaactannnnnnngta |
100 |
Q |
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| T |
26785318 |
ttgcaatatgctatggttgaagaactgaagacaattgaaaaaatgaaacttggtacttgactaagttatta--gaggaagaagaaaactatttttttgta |
26785415 |
T |
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| Q |
101 |
ggttagaggatcaattagctgatatcatgacaaagctcttgaaaatagagaaattcagagagatgagaacattcttaattgtagatcctttaccgga |
197 |
Q |
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| T |
26785416 |
ggttagaggatcaattagctgatatcatgataaagctcttgaaaatagagaaattcagagagatgagaacattcttaattgtagatcctttaccgga |
26785512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 355
Target Start/End: Complemental strand, 26785636 - 26785605
Alignment:
| Q |
324 |
aataaaatctacactgcggtgtagattttatt |
355 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
26785636 |
aataaaatctacactgcggtgtagattttatt |
26785605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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