View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11596_low_5 (Length: 536)
Name: NF11596_low_5
Description: NF11596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11596_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 15 - 521
Target Start/End: Complemental strand, 53118349 - 53117843
Alignment:
| Q |
15 |
cttttcccttgttgaattgagcaaaaagatttgttggcatggtttggagttgcttaacagatattgaacataaaaatagttcagaaattggattacaatg |
114 |
Q |
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| T |
53118349 |
cttttcccttgttgaattgagcaaaaagatttgttggcatggtttggagttgcttaacagatattgaacataaaaatagttcagaaattggattacaatg |
53118250 |
T |
|
| Q |
115 |
tcatctgatctgctttgcatagaattatggaacattcttcactcacaatatcagtcatttgcttaataagttgtggttatgattctaagtttggtccata |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
53118249 |
tcatctgatctgctttgcatagaattatggaacattcttcactcacaatatcagtcatttgcttaataagttgtggttatgattctaagtttggt-cata |
53118151 |
T |
|
| Q |
215 |
ttgcagcttgtaagctacattttggaagaaaaacgtgtcagtcctacattcatcataaatcatcccgagatcaggagtcctttggcaaagtggcacagat |
314 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53118150 |
ttgcagcttgtaagctacattttggaagaaacacgtgtcagtcctacattcatcataaatcatcccgagatcatgagtcctttggcaaagtggcacagat |
53118051 |
T |
|
| Q |
315 |
caaaaccaggtctgacgaagcgtttttaattgttcgtcaataagcatgaagttaacaacttttttattc-ttgtcactgtttttctgttaattttcagct |
413 |
Q |
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| T |
53118050 |
caaaaccaggtctgacgaagcgtttttaattgttcgtcaataagcatgaagttaacaacttttttattctttgtcactgtttttctgttaattttcagct |
53117951 |
T |
|
| Q |
414 |
ttgcaatgcatatactgaattgaatgatccagtagtccaatgtcagagatttgccgaacaactcaaggtattatgtaaagattagcttactaaattaagt |
513 |
Q |
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| T |
53117950 |
ttgcaatgcatatactgaattgaatgatccagtagtgcaacgtcagagatttgccgaacaactcaaggtatgatgtaaagattagcgtactaaattaagt |
53117851 |
T |
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| Q |
514 |
ctgtgctc |
521 |
Q |
| |
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|||||||| |
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| T |
53117850 |
ctgtgctc |
53117843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 72 - 366
Target Start/End: Complemental strand, 53108966 - 53108673
Alignment:
| Q |
72 |
cagatattgaacataaaaatagttcagaaattggattacaatgtcatctgatctgctttgcatagaattatggaacattcttcactcacaatatcagtca |
171 |
Q |
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|||| ||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| |
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| T |
53108966 |
cagaaattgaacgtaaaaa-agttcagaaattggattaaaatgtgatctgatctgctttgcatagaaatatgggacattcttaactcacaatattagtca |
53108868 |
T |
|
| Q |
172 |
tttgcttaataagttgtggtta-tgattctaagtttggtccatattgcagcttgtaagctacattttggaagaaaaacgtgtcagtcctacattcatcat |
270 |
Q |
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|||| |||||||| |||||||| ||||||||||||||||| | |||||||||||| | || |||||||||||| | |||||| ||||||||||||||| |
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| T |
53108867 |
tttgattaataagctgtggttaatgattctaagtttggtc-acattgcagcttgtcggacactttttggaagaaacatgtgtcaatcctacattcatcat |
53108769 |
T |
|
| Q |
271 |
aaatcatcccgagatcaggagtcctttggcaaagtggcacagatcaaaaccaggtctgacgaagcgtttttaattgttcgtcaataagcatgaagt |
366 |
Q |
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| T |
53108768 |
aaatcatcccgagatcatgagtcctttggcaaagtggcacagattaaaaccaggcctgaccgaacgttttgaattgttcgtcaataagcatgaagt |
53108673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 363 - 506
Target Start/End: Complemental strand, 53113744 - 53113601
Alignment:
| Q |
363 |
aagttaacaacttttttattcttgtcactgtttttctgttaattttcagctttgcaatgcatatactgaattgaatgatccagtagtccaatgtcagaga |
462 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| ||| |||||||| |
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| T |
53113744 |
aagttaacaactttttgattcttgtcactgtttttctgttaactttcagctttccaatgcatatactgaattgaatgatcctgtagtgcaacgtcagaga |
53113645 |
T |
|
| Q |
463 |
tttgccgaacaactcaaggtattatgtaaagattagcttactaa |
506 |
Q |
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| T |
53113644 |
tttgccgaacaactcaaggtatgatctaaagattagcttactaa |
53113601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 363 - 511
Target Start/End: Complemental strand, 53108632 - 53108484
Alignment:
| Q |
363 |
aagttaacaacttttttattcttgtcactgtttttctgttaattttcagctttgcaatgcatatactgaattgaatgatccagtagtccaatgtcagaga |
462 |
Q |
| |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||| |||||||| |
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| T |
53108632 |
aagttaacaactttttgattcttgtcactgtttgtctgttaattttcagctttgcaacggctatactgaattgaatgatccagtagtgcaacgtcagaga |
53108533 |
T |
|
| Q |
463 |
tttgccgaacaactcaaggtattatgtaaagattagcttactaaattaa |
511 |
Q |
| |
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||||| |||||||||||||||| |||||||||||||| ||| ||||||| |
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| T |
53108532 |
tttgctgaacaactcaaggtatgatgtaaagattagcgtacaaaattaa |
53108484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 211 - 330
Target Start/End: Complemental strand, 53113932 - 53113813
Alignment:
| Q |
211 |
catattgcagcttgtaagctacattttggaagaaaaacgtgtcagtcctacattcatcataaatcatcccgagatcaggagtcctttggcaaagtggcac |
310 |
Q |
| |
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|||||| ||||||| | || || |||||||||||| | |||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
53113932 |
catatttcagcttgcaggccactttttggaagaaacatgtgtcaatcctacattcatcataaatcatcccgagatcatgagccctttggcaaagtggcac |
53113833 |
T |
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| Q |
311 |
agatcaaaaccaggtctgac |
330 |
Q |
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||| | |||||||| ||||| |
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| T |
53113832 |
agaacgaaaccaggcctgac |
53113813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 363 - 511
Target Start/End: Complemental strand, 53126436 - 53126288
Alignment:
| Q |
363 |
aagttaacaacttttttattcttgtcactgtttttctgttaattttcagctttgcaatgcatatactgaattgaatgatccagtagtccaatgtcagaga |
462 |
Q |
| |
|
|||| |||| ||| || |||||| ||| |||||| ||||| |||||||||||||||||||||||||||| ||||| |||| || || ||| || ||||| |
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| T |
53126436 |
aagtgaacagcttattgattcttctcattgttttcttgttacttttcagctttgcaatgcatatactgaactgaataatcctgttgtgcaacgtgagaga |
53126337 |
T |
|
| Q |
463 |
tttgccgaacaactcaaggtattatgtaaagattagcttactaaattaa |
511 |
Q |
| |
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||||| ||||||||||||||| || |||| |||||||||||||||||| |
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| T |
53126336 |
tttgctcaacaactcaaggtatgatataaatattagcttactaaattaa |
53126288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 218 - 366
Target Start/End: Complemental strand, 53126623 - 53126475
Alignment:
| Q |
218 |
cagcttgtaagctacattttggaagaaaaacgtgtcagtcctacattcatcataaatcatcccgagatcaggagtcctttggcaaagtggcacagatcaa |
317 |
Q |
| |
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||||||||| || || |||||||||||| |||||| ||||||||||||||| ||||| ||||| || | |||||||||||| |||| ||||||| || |
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| T |
53126623 |
cagcttgtaggccactttttggaagaaacgtgtgtcaatcctacattcatcatgaatcaccccgaaataatgagtcctttggccaagtcgcacagagaaa |
53126524 |
T |
|
| Q |
318 |
aaccaggtctgacgaagcgtttttaattgttcgtcaataagcatgaagt |
366 |
Q |
| |
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||||||| ||||| |||||||| ||||||| ||||||||||||||||| |
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| T |
53126523 |
aaccaggcctgaccgagcgttttgaattgtttgtcaataagcatgaagt |
53126475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 234 - 348
Target Start/End: Original strand, 15841087 - 15841201
Alignment:
| Q |
234 |
ttttggaagaaaaacgtgtcagtcctacattcatcataaatcatcccgagatcaggagtcctttggcaaagtggcacagatcaaaaccaggtctgacgaa |
333 |
Q |
| |
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||||||| |||| | |||||| |||||||||||||||||| || || ||||| | |||||||||||| |||||||||||| |||||||||| ||||| | |
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| T |
15841087 |
ttttggaggaaacatgtgtcaatcctacattcatcataaaccacccagagataatgagtcctttggcgaagtggcacagaacaaaaccaggcctgactga |
15841186 |
T |
|
| Q |
334 |
gcgtttttaattgtt |
348 |
Q |
| |
|
|||||| ||||||| |
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|
| T |
15841187 |
acgttttgaattgtt |
15841201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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