View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11596_low_9 (Length: 356)
Name: NF11596_low_9
Description: NF11596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11596_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 1356903 - 1357232
Alignment:
| Q |
18 |
gcagcaacaacattcattcattcatggatgacaagaaaaacaaacctcttcatgttgtcatgtttccatggatagccatgggacacatgtacccatgttt |
117 |
Q |
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| T |
1356903 |
gcagcaacaacattcattcattcatggataacaagaaaaacaaacctcttcatgttgtcatgtttccatggatagccatgggacacatgtacccatgttt |
1357002 |
T |
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| Q |
118 |
tgaggtttccaagattctttcacaaaatggtcactttgtcacactcatatctactccttcaatcatagatcgtcttcctaaactctcacaaaccctttca |
217 |
Q |
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| T |
1357003 |
tgaggtttccaagattctttcacaaaatggtcactttgtcacactcatatctactccttcaatcatagatcgtcttcctaaactctcacaaaccctttca |
1357102 |
T |
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| Q |
218 |
ccatttgttaatctcatcaaacttcccttatcatcttacattgacaaaaaccatcttccaacaaatgcagattcaaccatggacattccctccaacaaac |
317 |
Q |
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| T |
1357103 |
ccattttttaatctcatcaaacttcccttatcatcttacattgacaaaaaccatcttccaacaaatgcagattcaaccatggacattccctccaacaaac |
1357202 |
T |
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| Q |
318 |
tctattaccttaaactagcctatgcttctc |
347 |
Q |
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| T |
1357203 |
tctattaccttaaactagcctatgattctc |
1357232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 12845690 - 12845785
Alignment:
| Q |
57 |
acaaacctcttcatgttgtcatgtttccatggatagccatgggacacatgtacccatgttttgaggtttccaagattctttcacaaaatggtcact |
152 |
Q |
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| T |
12845690 |
acaagcctcttcatgttgtaatggttccatggctagctatgggacacatatacccttattttgagttggccaagattcttgctcaaaagggtcact |
12845785 |
T |
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