View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11597_low_1 (Length: 843)
Name: NF11597_low_1
Description: NF11597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11597_low_1 |
 | |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 512 - 830
Target Start/End: Complemental strand, 8349622 - 8349304
Alignment:
| Q |
512 |
ttttagttatacgaatatcaacaatggttgtaaaattgtagaaatataatagctagaaagaaataccaagactaaaattctattcataatatctatatca |
611 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8349622 |
ttttagttatacgaatatcaacaatggttgtaaaattgtagaaatatattagctagaaagaaatcccaagactaaaattctattcataatatctatatca |
8349523 |
T |
|
| Q |
612 |
ctcagcagcagtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatcttacgaaacaagagca |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
8349522 |
ctcagcagcagtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagaattttgttaaacttatcttacgaaacaagagca |
8349423 |
T |
|
| Q |
712 |
ttcaacaagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttggttagcaaacaagag |
811 |
Q |
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|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
8349422 |
ttcaataagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacaattggttagtaaacaagag |
8349323 |
T |
|
| Q |
812 |
cgtgtcacaaccattgatg |
830 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
8349322 |
cgtgtcacaaccattgatg |
8349304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 8350136 - 8349969
Alignment:
| Q |
1 |
tttctgataatgctgaaaattcatgtcaagagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
8350136 |
tttctgataatgctgaaaattcatgtcaagagaaatcaaagaggaaggaaaaatcaaagggagctccaattatagtttcttatttccctgttaactatta |
8350037 |
T |
|
| Q |
101 |
tccctcgcgcttgtagtcatgtagtattaatttacatctgctactt-atcaagaagagtgtaatcaac |
167 |
Q |
| |
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|||||| |||||||||||||| | | |||||||||||||||||||| || | ||||||||||||||| |
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|
| T |
8350036 |
tccctcacgcttgtagtcatgcaatgttaatttacatctgctacttaattatcaagagtgtaatcaac |
8349969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 8252982 - 8252867
Alignment:
| Q |
1 |
tttctgataatgctgaaaattcatgtcaagagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactatta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||| |
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| T |
8252982 |
tttctgataatgctgaaaattcatgtcaagagaaaccaaagaggaaggaaaaatcaaagggagctccaattgcagtttcttatttctctgttaacaattg |
8252883 |
T |
|
| Q |
101 |
tccctcgcgcttgtag |
116 |
Q |
| |
|
|| ||| ||||||||| |
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|
| T |
8252882 |
tctctcacgcttgtag |
8252867 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 8260676 - 8260574
Alignment:
| Q |
29 |
agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcatgtagtatt |
128 |
Q |
| |
|
||||||| |||||| || |||||||||||| ||||||| |||||||||||||||||||||||||||| ||||| ||| || ||||||||||| |||||| |
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|
| T |
8260676 |
agagaaacaaaagagcaaagaaaaatcaaagagagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcatgcagtatt |
8260577 |
T |
|
| Q |
129 |
aat |
131 |
Q |
| |
|
||| |
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|
| T |
8260576 |
aat |
8260574 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 8352830 - 8352758
Alignment:
| Q |
33 |
aaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccct |
105 |
Q |
| |
|
|||| |||||| ||||||||||| || |||||| | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
8352830 |
aaattaaagagaaaggaaaaatctaatggagcttcaattgtagtttcttatttccctgttaactattatccct |
8352758 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 8349669 - 8349624
Alignment:
| Q |
231 |
ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8349669 |
ttcaatgattggttgcttgcggcacaagaatctggttcagcttaaa |
8349624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 8265642 - 8265551
Alignment:
| Q |
29 |
agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcat |
120 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| |||||||| | | ||||||||| ||||| ||||| ||| || |||||||||| |
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| T |
8265642 |
agagaaacaaaagagtaaggaaaaatcaaagggagctccaattgtagtatatcatttccctgctaactcttatctctctcgtttgtagtcat |
8265551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 8334093 - 8334018
Alignment:
| Q |
45 |
aaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattat-ccctcgcgcttgtagtca |
119 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||| |
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| T |
8334093 |
aaggaaaaatcaaaaggagttccaattgtagtttcttatttcctcgttaactattatcccctcacgcttgtagtca |
8334018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 8356401 - 8356339
Alignment:
| Q |
29 |
agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgt |
91 |
Q |
| |
|
||||||| ||||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||| |
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|
| T |
8356401 |
agagaaaccaaagagcaaggaaaaatcaatgggagctccaattgtagttccttatttccctgt |
8356339 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 8258569 - 8258478
Alignment:
| Q |
29 |
agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccctgttaactattatccctcgcgcttgtagtcat |
120 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||| |||||||| | | |||||||| ||||| ||||| ||| || |||||||||| |
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|
| T |
8258569 |
agagaaacaaaagagtaaggaaaaatcaaagggagctccaattgtagtatatcatttccctactaactcttatctctcacgtttgtagtcat |
8258478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 8360574 - 8360515
Alignment:
| Q |
29 |
agagaaatcaaagaggaaggaaaaatcaaagggagctccgattgtagtttcttatttccc |
88 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||| ||||||||| |||||||||| |
|
|
| T |
8360574 |
agagaaaccaaagatcaaggaaaaatcaataggagctccaattgtagttacttatttccc |
8360515 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 241 - 365
Target Start/End: Original strand, 44799682 - 44799806
Alignment:
| Q |
241 |
ggttgcttgcggcacaagaatctggttcagcttaaaggacagtgttgtgaagggaatgaactggttttggtttatgagtatttaccatatggaagccttc |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
44799682 |
ggttgcttgcggcacaagaatctggttcagcttaaagggtggtgttgtgaagggaatgaattggttttggtttatgagtatctaccaaatggaagccttg |
44799781 |
T |
|
| Q |
341 |
ataaagttcttcatagaaatttaag |
365 |
Q |
| |
|
|||||||||| ||||| |||||||| |
|
|
| T |
44799782 |
ataaagttctgcataggaatttaag |
44799806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 481 - 535
Target Start/End: Complemental strand, 44614647 - 44614593
Alignment:
| Q |
481 |
agtgagaaatgcaataaaaattgtagaaatgttttagttatacgaatatcaacaa |
535 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||||| || |||||||||| |
|
|
| T |
44614647 |
agtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaacaa |
44614593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 481 - 535
Target Start/End: Original strand, 44793922 - 44793976
Alignment:
| Q |
481 |
agtgagaaatgcaataaaaattgtagaaatgttttagttatacgaatatcaacaa |
535 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||||| || |||||||||| |
|
|
| T |
44793922 |
agtgagaaatgcaatacaaattatagaaatgctttagttacacatatatcaacaa |
44793976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 499 - 830
Target Start/End: Original strand, 11993658 - 11993975
Alignment:
| Q |
499 |
aattgtagaaatgttttagttatacgaatatcaacaatggttgtaaaattgtagaaatataatagctagaaagaaataccaagactaaaattctattcat |
598 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| |||||| ||| |||| ||||||||||||| ||||||| |
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|
| T |
11993658 |
aattgtagaaatgttttagttatacacatatcaacagtggtggtaaaattgtagaaatattttagctacaaacaaatcccaagactaaaat--tattcat |
11993755 |
T |
|
| Q |
599 |
a-atatctatatcactcagcagcagtgacccacacggccacacccaacataaatcacttgaactaatgtgttttgaagagagnnnnnnnaaacttatctt |
697 |
Q |
| |
|
|| || | ||||| || || |||||||| | || |||||||||||||||||||| ||| ||||| || |||||| |||| |
|
|
| T |
11993756 |
ggatgactttctcacttagtag---tgacccac----------caaatgtaaatcacttgaactaatgtttttggaagatagtttttttaaacttctctt |
11993842 |
T |
|
| Q |
698 |
acgaaacaagagcattcaacaagctcttacaattgtgaagtttggtaaaaaatggaaggttggtagtggggagaacgtccgggtatttcatgacagttgg |
797 |
Q |
| |
|
|| ||| |||||||||||| ||||| || |||||| |||| |||| || |||||||||||||||||| ||||| ||||||| ||| |||||| |||| |
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|
| T |
11993843 |
acaaaa-aagagcattcaagaagctattccaattgcgaagcgaggtacaagatggaaggttggtagtggagagaatatccgggtgttttatgacaattgg |
11993941 |
T |
|
| Q |
798 |
-ttagcaaacaagagcgtgtcacaaccattgatg |
830 |
Q |
| |
|
||||||||||||||| || ||||||||||||| |
|
|
| T |
11993942 |
tttagcaaacaagagcatggaacaaccattgatg |
11993975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 483 - 520
Target Start/End: Original strand, 27216 - 27253
Alignment:
| Q |
483 |
tgagaaatgcaataaaaattgtagaaatgttttagtta |
520 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
27216 |
tgagaaatgcaatacaaattgtagaaatgctttagtta |
27253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 483 - 520
Target Start/End: Complemental strand, 171576 - 171539
Alignment:
| Q |
483 |
tgagaaatgcaataaaaattgtagaaatgttttagtta |
520 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
171576 |
tgagaaatgcaatacaaattgtagaaatgctttagtta |
171539 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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