View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11598_high_5 (Length: 333)

Name: NF11598_high_5
Description: NF11598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11598_high_5
NF11598_high_5
[»] chr4 (31 HSPs)
chr4 (65-303)||(52987858-52988096)
chr4 (1-73)||(20129329-20129401)
chr4 (1-73)||(10352960-10353032)
chr4 (1-73)||(42333852-42333924)
chr4 (10-73)||(17511310-17511373)
chr4 (4-73)||(29319781-29319850)
chr4 (1-73)||(25930727-25930799)
chr4 (1-73)||(26439355-26439427)
chr4 (1-73)||(34407360-34407432)
chr4 (1-73)||(43143660-43143732)
chr4 (1-73)||(43355923-43355995)
chr4 (4-73)||(30077707-30077776)
chr4 (1-73)||(29996059-29996131)
chr4 (1-72)||(44156670-44156741)
chr4 (1-66)||(36382428-36382493)
chr4 (1-73)||(3292972-3293044)
chr4 (1-73)||(6690311-6690383)
chr4 (1-73)||(13012207-13012279)
chr4 (1-73)||(30109975-30110047)
chr4 (1-73)||(30216818-30216890)
chr4 (1-73)||(47500792-47500864)
chr4 (1-73)||(48129985-48130057)
chr4 (1-73)||(48989347-48989419)
chr4 (1-72)||(45194195-45194266)
chr4 (17-73)||(1817752-1817808)
chr4 (1-73)||(40529034-40529106)
chr4 (5-73)||(50205153-50205221)
chr4 (1-72)||(26448072-26448143)
chr4 (39-73)||(6235577-6235611)
chr4 (10-73)||(6254572-6254635)
chr4 (10-72)||(35545981-35546043)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-73)||(17861-17933)
[»] chr7 (15 HSPs)
chr7 (1-73)||(3114172-3114244)
chr7 (1-73)||(5555506-5555578)
chr7 (1-73)||(14777183-14777255)
chr7 (1-73)||(36630835-36630907)
chr7 (1-73)||(8394144-8394216)
chr7 (10-73)||(37002220-37002283)
chr7 (1-73)||(8867807-8867879)
chr7 (1-73)||(40920079-40920151)
chr7 (2-73)||(33685584-33685655)
chr7 (1-73)||(34389132-34389204)
chr7 (1-73)||(35090187-35090259)
chr7 (11-73)||(26624775-26624837)
chr7 (13-73)||(38638312-38638372)
chr7 (2-73)||(43184544-43184615)
chr7 (41-73)||(10868551-10868583)
[»] chr5 (20 HSPs)
chr5 (1-73)||(10033946-10034018)
chr5 (2-73)||(13817997-13818068)
chr5 (1-73)||(16155016-16155088)
chr5 (5-73)||(19985962-19986030)
chr5 (1-73)||(26283394-26283466)
chr5 (1-73)||(36293697-36293769)
chr5 (1-73)||(39434715-39434787)
chr5 (1-73)||(43068896-43068968)
chr5 (2-73)||(39657582-39657653)
chr5 (12-73)||(16333952-16334013)
chr5 (4-73)||(37254663-37254732)
chr5 (1-73)||(1776452-1776524)
chr5 (1-73)||(31501792-31501864)
chr5 (2-73)||(3155707-3155778)
chr5 (4-73)||(28801309-28801378)
chr5 (1-73)||(17332627-17332699)
chr5 (1-73)||(33430340-33430412)
chr5 (1-73)||(12278936-12279008)
chr5 (1-73)||(31680386-31680458)
chr5 (1-73)||(36291390-36291462)
[»] chr2 (21 HSPs)
chr2 (1-73)||(41251710-41251782)
chr2 (1-73)||(18981635-18981707)
chr2 (1-73)||(42440005-42440077)
chr2 (1-73)||(6403880-6403952)
chr2 (1-73)||(16405619-16405691)
chr2 (1-73)||(44084679-44084751)
chr2 (1-72)||(35962734-35962805)
chr2 (4-73)||(8059409-8059478)
chr2 (1-73)||(2958177-2958248)
chr2 (5-73)||(17445117-17445183)
chr2 (1-73)||(771018-771090)
chr2 (1-73)||(8147370-8147442)
chr2 (1-73)||(32127217-32127289)
chr2 (12-73)||(31581698-31581759)
chr2 (1-73)||(12756913-12756985)
chr2 (1-73)||(26237976-26238047)
chr2 (1-73)||(45418602-45418674)
chr2 (1-73)||(26162775-26162847)
chr2 (1-57)||(7072644-7072700)
chr2 (10-73)||(2285890-2285953)
chr2 (10-72)||(4555288-4555350)
[»] chr6 (10 HSPs)
chr6 (4-73)||(34948834-34948903)
chr6 (1-73)||(29743302-29743374)
chr6 (1-73)||(398636-398708)
chr6 (1-73)||(33229412-33229484)
chr6 (10-73)||(13837849-13837912)
chr6 (1-72)||(18339125-18339196)
chr6 (1-67)||(24697899-24697965)
chr6 (5-73)||(28996753-28996821)
chr6 (1-68)||(31028445-31028512)
chr6 (4-67)||(24695509-24695572)
[»] chr8 (15 HSPs)
chr8 (1-73)||(34136901-34136973)
chr8 (1-72)||(3648871-3648942)
chr8 (1-72)||(36408570-36408641)
chr8 (1-73)||(16788101-16788173)
chr8 (1-73)||(4404027-4404099)
chr8 (5-73)||(29728462-29728530)
chr8 (1-66)||(15838305-15838370)
chr8 (1-73)||(3435288-3435360)
chr8 (1-72)||(39914534-39914605)
chr8 (4-73)||(9877242-9877311)
chr8 (1-73)||(23402127-23402199)
chr8 (5-73)||(40470569-40470637)
chr8 (1-71)||(2729274-2729344)
chr8 (1-67)||(10397122-10397188)
chr8 (14-73)||(42230971-42231028)
[»] chr3 (16 HSPs)
chr3 (1-73)||(6269502-6269574)
chr3 (1-73)||(22968520-22968592)
chr3 (1-73)||(19390165-19390237)
chr3 (1-73)||(19565577-19565649)
chr3 (1-73)||(39771809-39771881)
chr3 (4-73)||(11018288-11018357)
chr3 (1-73)||(34084198-34084270)
chr3 (1-73)||(40081816-40081887)
chr3 (1-73)||(6930970-6931042)
chr3 (1-73)||(27935197-27935269)
chr3 (1-73)||(45183000-45183072)
chr3 (1-73)||(45335894-45335965)
chr3 (1-73)||(6503645-6503717)
chr3 (2-73)||(33040973-33041044)
chr3 (4-73)||(5135291-5135360)
chr3 (1-57)||(35514285-35514341)
[»] chr1 (11 HSPs)
chr1 (1-73)||(42311017-42311089)
chr1 (5-72)||(7433468-7433535)
chr1 (1-73)||(26144274-26144346)
chr1 (1-73)||(321453-321525)
chr1 (10-73)||(3829012-3829075)
chr1 (10-73)||(32982132-32982195)
chr1 (11-73)||(33489716-33489778)
chr1 (1-73)||(23313257-23313330)
chr1 (4-73)||(41972351-41972420)
chr1 (1-73)||(17445332-17445404)
chr1 (1-72)||(35907571-35907642)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-73)||(541-613)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-73)||(31499-31571)
[»] scaffold0041 (1 HSPs)
scaffold0041 (1-73)||(52944-53016)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-73)||(480533-480605)
[»] scaffold0502 (1 HSPs)
scaffold0502 (1-72)||(5249-5320)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 65 - 303
Target Start/End: Complemental strand, 52988096 - 52987858
Alignment:
Q  65 aaagaaaaagattcttgtacagactgccccaaattgcctgttgtgtgtggtggctgtgagggtccaaatgagagggaagttagtccatgatgcaagaatg 164  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  52988096 aaagaaaaagattcttgtaaagactgccccaaattgcctgttgtgtgtggtggctgtgagggtccaaatgagagggaagttagtccatgttgcaagaatg 52987997  T
Q  165 agggctattcaaaggaatcgatcgaatcgtcaattatgcatgcttgcattagttttgacaagagagaagttggtggatgttgcaagagctacatgaagga 264  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52987996 agggctattcaaaggaatcgatagaatcgtcaattatgcatgcttgcattagttttgacaagagagaagttggtggatgttgcaagagctacatgaagga 52987897  T
Q  265 atgctgtggcaggcatggacattcaggggctggtagttt 303  Q
    |||||||||||||||||||||||||||||||||||||||    
T  52987896 atgctgtggcaggcatggacattcaggggctggtagttt 52987858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 20129329 - 20129401
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  20129329 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa 20129401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10353032 - 10352960
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||    
T  10353032 ccgggctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacatttacaaaaggaaaaa 10352960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 42333924 - 42333852
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||    
T  42333924 ccgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaa 42333852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 17511373 - 17511310
Alignment:
Q  10 atcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  17511373 atcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa 17511310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 29319850 - 29319781
Alignment:
Q  4 ggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| |||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||    
T  29319850 ggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacatttacaaaaagaaaaa 29319781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 25930727 - 25930799
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||    
T  25930727 ccgggctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacatttacaaaaagaaaaa 25930799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 26439427 - 26439355
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  26439427 ccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaa 26439355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 34407432 - 34407360
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  34407432 ccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaa 34407360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 43143732 - 43143660
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||    
T  43143732 ccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaa 43143660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 43355923 - 43355995
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  43355923 ccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaa 43355995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 30077776 - 30077707
Alignment:
Q  4 ggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||||||||| ||||||||||||||| ||| | |||||| ||||||||||||||||||||||||||    
T  30077776 ggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacatttacaaaaagaaaaa 30077707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 29996131 - 29996059
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||| ||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  29996131 ccggactcgatcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacgaaaagaaaaa 29996059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 44156670 - 44156741
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaa 72  Q
    |||||||||| |||||||||||||||||||||| ||| ||||||| | ||||||||| ||||||||||||||    
T  44156670 ccgggctcaaccgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaa 44156741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36382493 - 36382428
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaa 66  Q
    |||||||| ||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||||    
T  36382493 ccgggctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaa 36382428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3293044 - 3292972
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||| |||||||| ||| ||||||| | ||||||||| |||||||||||||||    
T  3293044 ccgggctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacacttacaaaaagaaaaa 3292972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6690383 - 6690311
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||| |||||||| ||| ||||||| | ||||||||| |||||||||||||||    
T  6690383 ccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaa 6690311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 13012207 - 13012279
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||||||||||| |||| | |||||  |||||||||||||| |||||||||||    
T  13012207 ccgggctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacatttataaaaagaaaaa 13012279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 30109975 - 30110047
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||| ||| |||||||||||||||||||||||| ||| || |||| ||||||||||| |||||||||||||||    
T  30109975 ccggactcgatcgataatttttgcacattagacccaaacccaaagaccattaacacacttacaaaaagaaaaa 30110047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 30216890 - 30216818
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||| ||| |||||||   ||||||||| |||||||||||||||    
T  30216890 ccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaa 30216818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 47500792 - 47500864
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| | |||||  ||||||||||||||  ||||||||||    
T  47500792 ccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttatgaaaagaaaaa 47500864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 48129985 - 48130057
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||| ||||||| ||| |||||||  |||||||||| |||||||||||||||    
T  48129985 ccgggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacacttacaaaaagaaaaa 48130057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 48989347 - 48989419
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| || ||||||||||||||||||||| || |||  |||||||||||||||||| |||||||||||||||    
T  48989347 ccgggttcgatcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaaaaagaaaaa 48989419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 45194195 - 45194266
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaa 72  Q
    |||| ||| ||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| ||||    
T  45194195 ccggactcgatcaataatttttgcacattaaactcaacccaaaagtccattaacacacttacaaaaaaaaaa 45194266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 1817752 - 1817808
Alignment:
Q  17 atttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||||||||||  ||||||||||||||||||| ||||||| |||||||||||    
T  1817752 atttttgcacattagatccaatccaaaagtccattaatacatttataaaaagaaaaa 1817808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 40529034 - 40529106
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||| ||| ||||||||||||||||||||| |||||| | ||||   ||||||||||||||||||||||||||    
T  40529034 ccggactcgatcgataatttttgcacattaaactcaacctaaaaactcattaacacatttacaaaaagaaaaa 40529106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 50205221 - 50205153
Alignment:
Q  5 gctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||| |||||||||||||||||||||||  ||| ||||||| | ||||||||| |||||||||||||||    
T  50205221 gctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacacttacaaaaagaaaaa 50205153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26448072 - 26448143
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaa 72  Q
    |||| ||| ||||||||||||||||||||| |   || ||||||||||||||||||| ||||||||| ||||    
T  26448072 ccggactcgatcgataatttttgcacattaaatctaacccaaaagtccattaacacacttacaaaaaaaaaa 26448143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 6235577 - 6235611
Alignment:
Q  39 ccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||||||||||||||||||||||||||||||    
T  6235577 ccaaaagtccattaacacatttacaaaaagaaaaa 6235611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 6254572 - 6254635
Alignment:
Q  10 atcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||||||||||||||| || ||| ||||||| | ||||||||| || |||||| |||||    
T  6254572 atcgataatttttgcacattaaacccaacccaaaagacaattaacacacttgcaaaaaaaaaaa 6254635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 35545981 - 35546043
Alignment:
Q  10 atcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaa 72  Q
    ||||| ||||||||| ||| |||| ||| ||||||| | ||||||||| ||||||||||||||    
T  35545981 atcgacaatttttgcgcatcagacccaacccaaaagccaattaacacacttacaaaaagaaaa 35546043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17861 - 17933
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  17861 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa 17933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3114244 - 3114172
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  3114244 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa 3114172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 5555506 - 5555578
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||    
T  5555506 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcatttacaaaaagaaaaa 5555578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 14777255 - 14777183
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||    
T  14777255 ccgggctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaa 14777183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36630835 - 36630907
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||    
T  36630835 ccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaagaaaaa 36630907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 8394144 - 8394216
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||||||||| |||||| | |||||||||||||||||||||||||| ||||||    
T  8394144 ccgggctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaggaaaaa 8394216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 37002283 - 37002220
Alignment:
Q  10 atcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||    
T  37002283 atcgataatttttgcacattagacccaatccaaaagtcaattaacacacttacaaaaagaaaaa 37002220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 8867879 - 8867807
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||| ||||||| ||||||||||| | ||||| |||||||||||||||||||    
T  8867879 ccgggctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttacaaaaagaaaaa 8867807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 40920151 - 40920079
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||||||||||| | || ||||||| | |||||||||||||||||||||||||    
T  40920151 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaa 40920079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 33685584 - 33685655
Alignment:
Q  2 cgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||| ||||||||||||||||||||| || ||| ||||||| ||||||||||| |||||||||||||||    
T  33685584 cgggctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacacttacaaaaagaaaaa 33685655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 34389204 - 34389132
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||| ||| |||||||   ||||||||| |||||||||||||||    
T  34389204 ccgggctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaa 34389132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 35090187 - 35090259
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||| |||||||||||||||||||| ||| ||||||| | ||||||||| |||||||||||||||    
T  35090187 ccgggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaa 35090259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 26624775 - 26624837
Alignment:
Q  11 tcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||||||||| ||||||| ||||||||||||  ||||||||| |||||||||||||||    
T  26624775 tcgataatttttgcatattagacccaatccaaaagttaattaacacacttacaaaaagaaaaa 26624837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 38638372 - 38638312
Alignment:
Q  13 gataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||||||||||||||  ||| ||||||||| ||||||||| |||||||||||||||    
T  38638372 gataatttttgcacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaa 38638312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 43184615 - 43184544
Alignment:
Q  2 cgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||| ||||||||||||| | ||| ||||| || ||||||| | ||||||| | |||||||||||||||    
T  43184615 cgggctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatacttacaaaaagaaaaa 43184544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 10868583 - 10868551
Alignment:
Q  41 aaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| |||||||||||||||||||||||||||    
T  10868583 aaaagcccattaacacatttacaaaaagaaaaa 10868551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 10033946 - 10034018
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  10033946 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa 10034018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 13817997 - 13818068
Alignment:
Q  2 cgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  13817997 cgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa 13818068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 16155016 - 16155088
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  16155016 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaa 16155088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 19985962 - 19986030
Alignment:
Q  5 gctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||| ||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||    
T  19985962 gctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaaaaagaaaaa 19986030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 26283466 - 26283394
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||    
T  26283466 ccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaa 26283394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 36293769 - 36293697
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||| ||| |||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  36293769 ccggactcgatcgataatttttgtacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa 36293697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 39434715 - 39434787
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| ||||||    
T  39434715 ccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaatgaaaaa 39434787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 43068896 - 43068968
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||| ||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  43068896 ccgggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaaaaagaaaaa 43068968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 39657653 - 39657582
Alignment:
Q  2 cgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||| || ||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||    
T  39657653 cgggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaa 39657582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 16334013 - 16333952
Alignment:
Q  12 cgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||    
T  16334013 cgataatttttgcacattagattcaacccaaaagcccattaacacatttacaaaaagaaaaa 16333952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 37254663 - 37254732
Alignment:
Q  4 ggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||| ||||||||| |||||||||||||||    
T  37254663 ggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacacttacaaaaagaaaaa 37254732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 1776524 - 1776452
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||| |||||| | |||| | |||||||||||||||||||||||||||||||||    
T  1776524 ccgggctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaaaaagaaaaa 1776452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 31501864 - 31501792
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||| | ||||||||| |||||||||||||||    
T  31501864 ccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaa 31501792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 3155778 - 3155707
Alignment:
Q  2 cgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||| ||| |||||||||||||||| ||||||| | ||||||||||||||||||||| |||||||||||    
T  3155778 cgggctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacatttataaaaagaaaaa 3155707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 28801309 - 28801378
Alignment:
Q  4 ggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| |||||||||||||||||||||||  ||| ||||||| ||||||||||| |||||||||||||||    
T  28801309 ggctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacacttacaaaaagaaaaa 28801378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 17332699 - 17332627
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||| ||||||| ||| ||||||| | ||||||||| |||||||||||||||    
T  17332699 ccgggctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaa 17332627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 33430340 - 33430412
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||| |||||||| ||| ||||||| | ||||||||| |||||||||||||||    
T  33430340 ccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaa 33430412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12279008 - 12278936
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||| ||| |||||||||||||||||||||||| ||| ||||| | | ||||||||| |||||||||||||||    
T  12279008 ccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacacttacaaaaagaaaaa 12278936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31680386 - 31680458
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||| | |||||||| ||| ||||||| | ||||||||| |||||||||||||||    
T  31680386 ccgggctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaa 31680458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 36291390 - 36291462
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| || ||| |||||||||||||||||||   || | |||||| ||||||||||||||||||||||||||    
T  36291390 ccgggttcgatcaataatttttgcacattagatctaacctaaaagttcattaacacatttacaaaaagaaaaa 36291462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 41251782 - 41251710
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  41251782 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa 41251710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 18981635 - 18981707
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| || ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  18981635 ccgggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacatttacaaaaagaaaaa 18981707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 42440005 - 42440077
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  42440005 ccgggctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacatttacaaaaagaaaaa 42440077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6403952 - 6403880
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||    
T  6403952 ccgggctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaa 6403880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 16405619 - 16405691
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||||||||||||||||||||| |||||||||| |||||||  |||||||||||||| |||||||||||    
T  16405619 ccgggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacatttataaaaagaaaaa 16405691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 44084751 - 44084679
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||||||||| || |||||||||||| |||||||||| |||||||||||||||    
T  44084751 ccgggctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttacaaaaagaaaaa 44084679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 35962734 - 35962805
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaa 72  Q
    |||||||| |||||||||||||||||||||||||||| |||||||   ||||||||||||||||||||||||    
T  35962734 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacatttacaaaaagaaaa 35962805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 8059478 - 8059409
Alignment:
Q  4 ggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||||||||||||||||||||||| |||| ||||||| | ||||||||| |||||||||||||||    
T  8059478 ggctcaatcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaaaaagaaaaa 8059409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 2958248 - 2958177
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| |||||||    
T  2958248 ccgggctcgatcgataatttt-gcacattagactcaacccaaaagcccattaacacatttacaaagagaaaaa 2958177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 17445183 - 17445117
Alignment:
Q  5 gctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||| |||||||||||||||||  ||||||||| ||||||| |||||||||||||||||||||||||||    
T  17445183 gctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacatttacaaaaagaaaaa 17445117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 771018 - 771090
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||| ||||||||||||||| ||| | ||||| ||||||||||| |||||||||||||||    
T  771018 ccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacacacttacaaaaagaaaaa 771090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 8147370 - 8147442
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||| |||||||||||||| |||  |||||||| ||||||||| |||||||||||||||    
T  8147370 ccgggctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaa 8147442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 32127289 - 32127217
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||| ||||||||||||||||| |||| | |||||||  ||||||||||||||||||||||||||    
T  32127289 ccgggctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacatttacaaaaagaaaaa 32127217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 31581759 - 31581698
Alignment:
Q  12 cgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| |||||||| ||||||||||  ||||||| |||||||||||||||||||||||||||    
T  31581759 cgatactttttgcatattagactcatcccaaaagcccattaacacatttacaaaaagaaaaa 31581698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12756985 - 12756913
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| || ||||||||||||||| |||||||| ||| ||||||| | ||||||||| |||||||||||||||    
T  12756985 ccgggttcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaa 12756913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 26237976 - 26238047
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||| |||||||| ||||||  ||| ||||||||||||||||||| |||||||||||||||    
T  26237976 ccgggctcgatcgata-tttttgcaaattagatgcaaaccaaaagtccattaacacacttacaaaaagaaaaa 26238047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45418602 - 45418674
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||| |||||||  ||| ||||||| | ||||||||| |||||||||||||||    
T  45418602 ccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacacttacaaaaagaaaaa 45418674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 26162847 - 26162775
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||  |||||||||||| ||||||| | |||| ||||||  ||||||||||| |||||||||||||||    
T  26162847 ccgggctccttcgataatttttacacattaaattcaacccaaaaacccattaacacacttacaaaaagaaaaa 26162775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 7072700 - 7072644
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacaca 57  Q
    |||||||| |||||||||||||  |||||| |||||| ||||||| |||||||||||    
T  7072700 ccgggctcgatcgataatttttttacattaaactcaacccaaaagcccattaacaca 7072644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 2285890 - 2285953
Alignment:
Q  10 atcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||||||||||||||| |  ||| | ||||||| |||||||||||||| ||| ||||||    
T  2285890 atcgataatttttgcacattaaatccaaccaaaaagtctattaacacatttacgaaaggaaaaa 2285953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 4555350 - 4555288
Alignment:
Q  10 atcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaa 72  Q
    ||||||||||||||||||| | || ||| |||||||  | |||||||| ||||||||||||||    
T  4555350 atcgataatttttgcacatcaaacccaacccaaaagctcgttaacacacttacaaaaagaaaa 4555288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 34948903 - 34948834
Alignment:
Q  4 ggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  34948903 ggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa 34948834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29743302 - 29743374
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||||||||||||||||||||||||||| ||| | |||||| |||||||||||||||| |||||||||    
T  29743302 ccgggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacatttacagaaagaaaaa 29743374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 398636 - 398708
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| | |||||  |||||||||||||| |||||||||||    
T  398636 ccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaa 398708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33229484 - 33229412
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||| ||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  33229484 ccgggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacatttccaaaaagaaaaa 33229412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 13837849 - 13837912
Alignment:
Q  10 atcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||||||||| ||||||||||||| |||||||  ||| ||||||||||||||||||||||    
T  13837849 atcgataatttttgtacattagactcaacccaaaagcacatcaacacatttacaaaaagaaaaa 13837912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 18339125 - 18339196
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaa 72  Q
    |||||||| ||| |||||||||||||||||||| ||||| ||||| | ||||||||| ||||||||||||||    
T  18339125 ccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaa 18339196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 24697965 - 24697899
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaa 67  Q
    |||||||||||||||||||||| |||||||| | ||| ||||||| ||||||||||| |||||||||    
T  24697965 ccgggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacacttacaaaaa 24697899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 28996753 - 28996821
Alignment:
Q  5 gctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||| ||||||||||||||| |||||||| ||| | ||||||| ||||||||| |||||||||||||||    
T  28996753 gctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacacttacaaaaagaaaaa 28996821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 31028512 - 31028445
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaag 68  Q
    |||| ||| |||||||||||||||||||||||  ||| | |||||  |||||||||||||||||||||    
T  31028512 ccggactcgatcgataatttttgcacattagatccaacctaaaagctcattaacacatttacaaaaag 31028445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 24695509 - 24695572
Alignment:
Q  4 ggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaa 67  Q
    |||| ||||||| ||||||  ||||||| ||||| ||||||| ||||||||||| |||||||||    
T  24695509 ggctaaatcgatcattttttaacattaggctcaacccaaaagcccattaacacacttacaaaaa 24695572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 34136973 - 34136901
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||    
T  34136973 ccgggctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacacttacaaaaagaaaaa 34136901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 3648942 - 3648871
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaa 72  Q
    |||||||| ||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  3648942 ccgggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaa 3648871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36408570 - 36408641
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaa 72  Q
    |||||||| |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||    
T  36408570 ccgggctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacatttacaaaaagaaaa 36408641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 16788173 - 16788101
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||    
T  16788173 ccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaa 16788101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 4404027 - 4404099
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| | ||||||| | |||||||||||||||    
T  4404027 ccgggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatacttacaaaaagaaaaa 4404099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 29728530 - 29728462
Alignment:
Q  5 gctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||| |||||||| ||||||||||||||||||| |||||||  ||||||||||||||||||||||||||    
T  29728530 gctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaa 29728462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15838305 - 15838370
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaa 66  Q
    |||||||| || |||||||||||||||||| |||||| | ||||||||||||||||||||||||||    
T  15838305 ccgggctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaa 15838370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3435288 - 3435360
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||  |||||||||||||||||||||||| ||| ||||||  ||||||||||| |||||||||||||||    
T  3435288 ccgggcttgatcgataatttttgcacattagacccaacccaaaaacccattaacacacttacaaaaagaaaaa 3435360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 39914534 - 39914605
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaa 72  Q
    |||||||| |||||||||||||||||||||||||||| | |||||  |||||||||||||| ||||| ||||    
T  39914534 ccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaaaaaaa 39914605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 9877242 - 9877311
Alignment:
Q  4 ggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| || |||||||||||||||||||||  || ||||||||| ||||||||| |||||||||||||||    
T  9877242 ggctcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaaaaagaaaaa 9877311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 23402127 - 23402199
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||| |||||| ||||||| ||| ||||||| | ||||||||| |||||||||||||||    
T  23402127 ccgggctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaa 23402199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 40470637 - 40470569
Alignment:
Q  5 gctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||| |||||||||||||||||||||||| |||  |||||||||||||||||| ||| ||||| |||||    
T  40470637 gctcgatcgataatttttgcacattagacccaaatcaaaagtccattaacacacttataaaaaaaaaaa 40470569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 2729344 - 2729274
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaa 71  Q
    |||||||| ||||||||||||| ||||||| |  ||||||||||| ||||||||||| ||| |||||||||    
T  2729344 ccgggctcgatcgataatttttacacattaaatccaatccaaaagcccattaacacacttataaaaagaaa 2729274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 10397188 - 10397122
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaa 67  Q
    |||||||||||||||||||| | ||||||||  |||| ||||||| | ||||||||| ||| |||||    
T  10397188 ccgggctcaatcgataatttcttcacattaggttcaacccaaaagccgattaacacagttaaaaaaa 10397122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 42230971 - 42231028
Alignment:
Q  14 ataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||||||||||| |  |||  |||||||||||||||||  |||||||||||||||    
T  42230971 ataatttttgcacattaaatccaactcaaaagtccattaacac--ttacaaaaagaaaaa 42231028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6269574 - 6269502
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  6269574 ccggactcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaa 6269502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 22968592 - 22968520
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  22968592 ccgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacatttacaaaaagaaaaa 22968520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 19390165 - 19390237
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| || |||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||    
T  19390165 ccgggttcgatcgataatttttgcacattagactcaacctaaaagtctattaacacatttacaaaaagaaaaa 19390237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 19565649 - 19565577
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| ||||||||||||||||||||||||||| ||| | |||| ||||||||||||||||||||||||||||    
T  19565649 ccgggttcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacatttacaaaaagaaaaa 19565577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 39771809 - 39771881
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||    
T  39771809 ccgggctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaa 39771881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 11018357 - 11018288
Alignment:
Q  4 ggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| |||||||||||||||||||||||||||| ||||||| | ||||||||| |||||||||||||||    
T  11018357 ggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaa 11018288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 34084270 - 34084198
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||| ||| ||||||||||||||||||||| | |||| | |||||||||||||||||||||||||||||||||    
T  34084270 ccggactcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaaaaagaaaaa 34084198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 40081887 - 40081816
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||| ||||||||||||| |||||||  ||||||||||||||||||||||||||    
T  40081887 ccgggctcgatcgataatttttgaacattagactcaa-ccaaaagctcattaacacatttacaaaaagaaaaa 40081816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6931042 - 6930970
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||| |||||||  ||| ||||||| | |||||||||||||||||||||||||    
T  6931042 ccgggctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacatttacaaaaagaaaaa 6930970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 27935197 - 27935269
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||||||||| || ||| |||||||  |||||||||| |||||||||||||||    
T  27935197 ccgggctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaaaaagaaaaa 27935269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45183000 - 45183072
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||| |||||||| ||| ||||||| | ||||||||| |||||||||||||||    
T  45183000 ccgggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaa 45183072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 45335894 - 45335965
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||| ||||||||||||||||| |||||||||| ||| | |||||| ||||||||||||||||||||||||||    
T  45335894 ccggactcaatcgataatttttacacattagacccaaccaaaaagt-cattaacacatttacaaaaagaaaaa 45335965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 6503717 - 6503645
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||| ||||||||| ||||||||||| ||||||| | |||| |||| |||||||||||||||    
T  6503717 ccgggctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacacttacaaaaagaaaaa 6503645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 33040973 - 33041044
Alignment:
Q  2 cgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||| || ||||||||||||| ||||||| ||| |||||||   ||||||||| |||||||||||||||    
T  33040973 cgggctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttacaaaaagaaaaa 33041044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 73
Target Start/End: Original strand, 5135291 - 5135360
Alignment:
Q  4 ggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| |||||| ||||||| ||||||||| ||| | |||||  |||||||||| |||||||||||||||    
T  5135291 ggctcgatcgattatttttgtacattagacccaacctaaaagctcattaacacacttacaaaaagaaaaa 5135360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 35514285 - 35514341
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacaca 57  Q
    |||||||| |||||||||||| ||| | ||||  ||| |||||||||||||||||||    
T  35514285 ccgggctcgatcgataattttcgcatactagatccaacccaaaagtccattaacaca 35514341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 42311089 - 42311017
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||    
T  42311089 ccgggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaaaaagaaaaa 42311017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 7433468 - 7433535
Alignment:
Q  5 gctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaa 72  Q
    |||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  7433468 gctcgatctataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaa 7433535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 26144274 - 26144346
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| | |||||  |||||||||||||| |||||||||||    
T  26144274 ccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaa 26144346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 321525 - 321453
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||  |||||||  ||| ||||||||||||||||||| |||||||||||||||    
T  321525 ccgggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaaaaagaaaaa 321453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 3829012 - 3829075
Alignment:
Q  10 atcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||||||||||||||| || ||| |||||||| |||||||||| |||||||||||||||    
T  3829012 atcgataatttttgcacattaaacccaacccaaaagttcattaacacacttacaaaaagaaaaa 3829075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 32982195 - 32982132
Alignment:
Q  10 atcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||||||||||||||||||| ||| | ||||| ||||||||| |||||||||||||||||    
T  32982195 atcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaaaaagaaaaa 32982132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 33489716 - 33489778
Alignment:
Q  11 tcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||||||||||| ||||||||||||| | ||||| ||||||||||| |||| ||||||||||    
T  33489716 tcgataatttttgtacattagactcaaactaaaagcccattaacacacttactaaaagaaaaa 33489778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 23313257 - 23313330
Alignment:
Q  1 ccgggctcaatcgataattt-ttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| || ||| |||| |||||||||||||||||   |||||| ||||||||||||||||||||||||||    
T  23313257 ccgggctcgattgatgatttgttgcacattagactcaacataaaagttcattaacacatttacaaaaagaaaaa 23313330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 41972420 - 41972351
Alignment:
Q  4 ggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    ||||| |||||||||||||||||||||||  ||| | ||||| | ||||||||| |||||||||||||||    
T  41972420 ggctcgatcgataatttttgcacattagatccaacctaaaagcctattaacacacttacaaaaagaaaaa 41972351  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 17445332 - 17445404
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||  ||| |||||||||| ||||||||  ||| ||||||||| ||||||||| |||||||||||||||    
T  17445332 ccgggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaa 17445404  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 35907571 - 35907642
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaa 72  Q
    |||||||  |||||||||||||||||||||||| ||| ||||||| | ||||  ||| ||||||||||||||    
T  35907571 ccgggcttgatcgataatttttgcacattagacccaacccaaaagccaattagtacacttacaaaaagaaaa 35907642  T

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Target: scaffold2142 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 541 - 613
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| | |||||  |||||||||||||| |||||||||||    
T  541 ccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaa 613  T

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Target: scaffold0154 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31499 - 31571
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||| ||||| ||| ||||||| ||||||||||| |||||||||||||||    
T  31499 ccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacacttacaaaaagaaaaa 31571  T

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Target: scaffold0041 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 52944 - 53016
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| ||||||||||||||||||||||| | || ||||||| | |||||||||||||||||||||||||    
T  52944 ccgggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaa 53016  T

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Target: scaffold0002 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 480605 - 480533
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaaa 73  Q
    |||||||| |||||||||||||||||||||||||||| | |||||  |||||||||||||| |||||||||||    
T  480605 ccgggctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaa 480533  T

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Target: scaffold0502 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5249 - 5320
Alignment:
Q  1 ccgggctcaatcgataatttttgcacattagactcaatccaaaagtccattaacacatttacaaaaagaaaa 72  Q
    |||||||| ||| |||||||||||||||||||| ||||| ||||| | ||||||||| ||||||||||||||    
T  5249 ccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaa 5320  T

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