View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11598_low_1 (Length: 445)
Name: NF11598_low_1
Description: NF11598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11598_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 176 - 390
Target Start/End: Original strand, 275120 - 275334
Alignment:
| Q |
176 |
aaagatgccatggctgccctcaatcaggaagttatgcggcttggacagtctctgtataaccaacctggagatgcagatgcagcaggacctacaccacctg |
275 |
Q |
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| T |
275120 |
aaagatgccatggctgccctcaatcaggaagttatgcagcttggacagtctctatataaccaacccggagctgcagatgcagcaggacctacaccacctg |
275219 |
T |
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| Q |
276 |
gtagcgagtctggcccctcagaatcatcatcaggcaagggagcagatggggatgtgattgatgctgattttaccgactctaaatgagttatagagattat |
375 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
275220 |
gtagcgagtctggccccacagactcatcatcaggcaagggagcagatggagatgtgattgatgctgattttactgactctaaatgagttatagagattat |
275319 |
T |
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| Q |
376 |
ttaataggattgttt |
390 |
Q |
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||| ||||||||||| |
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| T |
275320 |
ttagtaggattgttt |
275334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 274926 - 275091
Alignment:
| Q |
18 |
agagattttcaaaggaggacaaggagaagagggatgcaatagacacaaagaaccaggcggactctgttgtctaccagactgagaagcaattgaaagagct |
117 |
Q |
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| T |
274926 |
agagattttcaaaggaggacaaggagaagagggatgcaatagacacaaagaatcaggcggactctgttgtctaccagactgaaaagcaattgaaagagct |
275025 |
T |
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| Q |
118 |
aggagaaaatgtacacgactctgtgaaagagaaggtggaagcaaagctggtagagcttaaagatgc |
183 |
Q |
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| T |
275026 |
aggagaaaaggtacctggccctgtgaaagaaaaggttgaagcaaagttggtagagcttaaagatgc |
275091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 230 - 390
Target Start/End: Complemental strand, 43617531 - 43617363
Alignment:
| Q |
230 |
tataaccaacctggagatgcagatgcagcaggacctacaccacctggt-agcgagtctggcccctcagaa-------tcatcatcaggcaagggagcaga |
321 |
Q |
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| T |
43617531 |
tataaccaacctggagctgcagatgcagcaggacctacaccacctggttagcgagtctggcccctcagaagtcagaatcatcatcaggcaagggagcaga |
43617432 |
T |
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| Q |
322 |
tggggatgtgattgatgctgattttaccgactctaaatgagttatagagattatttaataggattgttt |
390 |
Q |
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| T |
43617431 |
tggggatgtgattgatgctgattttactgactctaaatgagttatagagattatttaataggattgttt |
43617363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 43618509 - 43618455
Alignment:
| Q |
174 |
ttaaagatgccatggctgccctcaatcaggaagttatgcggcttggacagtctct |
228 |
Q |
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| T |
43618509 |
ttaaagatgccatggctgccctcaatcaggaagttatgcagcttggacagtctct |
43618455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 43618581 - 43618536
Alignment:
| Q |
138 |
ctgtgaaagagaaggtggaagcaaagctggtagagcttaaagatgc |
183 |
Q |
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| T |
43618581 |
ctgtgaaagagaaggtggaagcaaagctggaagagcttaaagatgc |
43618536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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