View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11599_high_10 (Length: 499)
Name: NF11599_high_10
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 82 - 423
Target Start/End: Complemental strand, 13303329 - 13302988
Alignment:
| Q |
82 |
attaggagcactttatgcagctcttgagaaagttggaggtgctaatttggaagtagtcatatcagaaagtggatggccttctcatggtgatgttgctgca |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13303329 |
attaggagcactttatgcagctcttgagaaagttggaggtgctaatttggaagtagtcatatcagaaagtggatggccttctcatggtgatgttgctgca |
13303230 |
T |
|
| Q |
182 |
tcagttgaaaatgcacaaatctactatgagaatttaattaagcatgtttctaatgggactattagtagacctaatcaagcattagaaacttatttatttg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13303229 |
tcagttgaaaatgcacaaatctactatgagaatttaattaagcatgtttctaatgggactattagtagacctaatcaagcattagaaacttatttatttg |
13303130 |
T |
|
| Q |
282 |
ccatgttcgatgaaaatcaaaaaggacctgctgaaacagagagacattatggtttgtttactcctaacaaagagctcaagtatcaaatcagtcatttact |
381 |
Q |
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|
||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||| ||||| |
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| T |
13303129 |
ccatgttcgatgaaaataaaaaaggacctgctgaaatagagagacattacggtttgtttactcctaataaacaactcaagtatcaaatcagtcaattact |
13303030 |
T |
|
| Q |
382 |
tatgtcttctaactcaacaacttatcaatcagaagaaggaag |
423 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
13303029 |
tatgtcttctaactcaacaactccccaaccagaagaaggaag |
13302988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 82 - 423
Target Start/End: Original strand, 13431641 - 13431982
Alignment:
| Q |
82 |
attaggagcactttatgcagctcttgagaaagttggaggtgctaatttggaagtagtcatatcagaaagtggatggccttctcatggtgatgttgctgca |
181 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13431641 |
attaggagcactttatgcagctcttgagaaagttggaggtgctaatttggaagtagtcatatcagaaagtggatggccttctcatggtgatgttgctgca |
13431740 |
T |
|
| Q |
182 |
tcagttgaaaatgcacaaatctactatgagaatttaattaagcatgtttctaatgggactattagtagacctaatcaagcattagaaacttatttatttg |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13431741 |
tcagttgaaaatgcacaaatctactatgagaatttaattaagcatgtttctaatgggactattagtagacctaatcaagcattagaaacttatttatttg |
13431840 |
T |
|
| Q |
282 |
ccatgttcgatgaaaatcaaaaaggacctgctgaaacagagagacattatggtttgtttactcctaacaaagagctcaagtatcaaatcagtcatttact |
381 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| ||| | |||||||||||||||||||| ||||| |
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| T |
13431841 |
ccatgttcgatgaaaataaaaaaggacctgctgaaaaagagagacattacggtttgtttactcctaataaacaactcaagtatcaaatcagtcaattact |
13431940 |
T |
|
| Q |
382 |
tatgtcttctaactcaacaacttatcaatcagaagaaggaag |
423 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
13431941 |
tatgtcttctaactcaacaactccccaaccagaagaaggaag |
13431982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 69 - 369
Target Start/End: Original strand, 29288578 - 29288878
Alignment:
| Q |
69 |
tatttgattcaacattaggagcactttatgcagctcttgagaaagttggaggtgctaatttggaagtagtcatatcagaaagtggatggccttctcatgg |
168 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
29288578 |
tatttgatgcaacattaggggcactttatgcagctcttgagaaaattggtggtgctaatttggaagtagtagtatcagaaagtggatggccttcagatgg |
29288677 |
T |
|
| Q |
169 |
tgatgttgctgcatcagttgaaaatgcacaaatctactatgagaatttaattaagcatgtttctaatgggactattagtagacctaatcaagcattagaa |
268 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||| || ||||||| || ||| ||||||||||||||||| |
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| T |
29288678 |
tggtgttgctgcatcaattgaaaatgcacaaatctaccatgagaatttgattaagcatgtgattactgggactcctaataggcctaatcaagcattagag |
29288777 |
T |
|
| Q |
269 |
acttatttatttgccatgttcgatgaaaatcaaaaaggacctgctgaaacagagagacattatggtttgtttactcctaacaaagagctcaagtatcaaa |
368 |
Q |
| |
|
||||| |||||||||||||| ||||||||| | |||||||| | |||||| || ||||| |||||||||||||||||| | ||| || |||| ||||||| |
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|
| T |
29288778 |
acttacttatttgccatgtttgatgaaaataataaaggaccagatgaaactgaaagacactatggtttgtttactcctgataaacagatcaaatatcaaa |
29288877 |
T |
|
| Q |
369 |
t |
369 |
Q |
| |
|
| |
|
|
| T |
29288878 |
t |
29288878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 13303408 - 13303361
Alignment:
| Q |
18 |
aaatctaacatagaacttgtcattggagtccctaatgataacatcaaa |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
13303408 |
aaatctaacatagaacttgtcattggagtccctaatgaagacatcaaa |
13303361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 13431562 - 13431609
Alignment:
| Q |
18 |
aaatctaacatagaacttgtcattggagtccctaatgataacatcaaa |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
13431562 |
aaatctaacatagaacttgtcattggagtccctaatgaagacatcaaa |
13431609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 428
Target Start/End: Complemental strand, 13302983 - 13302941
Alignment:
| Q |
386 |
tcttctaactcaacaacttatcaatcagaagaaggaagaatat |
428 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
13302983 |
tcttctaactcaacaactcctcaatcagaagaaggaggaatat |
13302941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 428
Target Start/End: Original strand, 13431987 - 13432029
Alignment:
| Q |
386 |
tcttctaactcaacaacttatcaatcagaagaaggaagaatat |
428 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
13431987 |
tcttctaactcaacaactcctcaatcagaagaaggaggaatat |
13432029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 60 - 383
Target Start/End: Complemental strand, 21286926 - 21286603
Alignment:
| Q |
60 |
atcaaactttatttgattcaacattaggagcactttatgcagctcttgagaaagttggaggtgctaatttggaagtagtcatatcagaaagtggatggcc |
159 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||| ||||||||||||||||||| |
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|
| T |
21286926 |
atcaaaatttatttgatgcaacattaggagcactttatgcagctcttgaaaaagttggtggtgcaaatttgaaagtagtagtatcagaaagtggatggcc |
21286827 |
T |
|
| Q |
160 |
ttctcatggtgatgttgctgcatcagttgaaaatgcacaaatctactatgagaatttaattaagcatgtttctaatgggactattagtagacctaatcaa |
259 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| || | | ||||||||| |
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|
| T |
21286826 |
ttctcatggtgatgttggtgcatcagttgaaaatgcacaaatctaccacgagaatttaattaagcatgtttctgtcgggactcctaatcggcctaatcaa |
21286727 |
T |
|
| Q |
260 |
gcattagaaacttatttatttgccatgttcgatgaaaatcaaaaaggacctgctgaaacagagagacattatggtttgtttactcctaacaaagagctca |
359 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| | ||| | |||| |
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|
| T |
21286726 |
gcattggaaacttatttatttgccatgtttgatgaaaatcaaaaaggacctgctgaaacagagaggtattatggtttatttacacctgataaacaactca |
21286627 |
T |
|
| Q |
360 |
agtatcaaatcagtcatttactta |
383 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
21286626 |
agtatcaaatcagtcaattactta |
21286603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 21287413 - 21287373
Alignment:
| Q |
21 |
tctaacatagaacttgtcattggagtccctaatgataacat |
61 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
21287413 |
tctaacatagaacttgtcattggagttcctaatgaaaacat |
21287373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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