View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_high_12 (Length: 469)
Name: NF11599_high_12
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_12 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Complemental strand, 25216702 - 25216251
Alignment:
| Q |
18 |
aggagactctatgtaagttacccacatttctacattaagatttacatgttcgatagaagagagatttatattgctctcacaaagtttctgtaaaggacca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25216702 |
aggagactctatgtaagttacccacatttctacattaagatttacatgttcgatagaagagagatttatattgctctcacaaagtttctgtaaaggatca |
25216603 |
T |
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| Q |
118 |
tacccgtgataaacaaaggtacagagatttggagtggataactgaaatttcatctcagacatggaaaagccagattgtattcttaaattggctagtgtgg |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25216602 |
tacccgcgataaacaaaggtacagagatttggagtggataactgaaatttcatctcagacatggaaaagccagattgtattcttaaattggctagtgtgg |
25216503 |
T |
|
| Q |
218 |
cattcactatgcagaggtttaaataatcacgaactatacaaccggtaatgaccaaagtatttaatttgtttaacgttgaaaagggattgacacgaccatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25216502 |
cattcactatgcagaggtttaaataatcacgaactatacaaccggtaatgaccaaagtatttaatttgtttaacgttgaaaagggattgacacgaccatc |
25216403 |
T |
|
| Q |
318 |
atcgccgacacaaaatataaaacgatgtaaagacaagttggttatttgtggtaaatttagagaagtaggaaataaattttgatgagaataatagtcaatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25216402 |
atcgccgacacaaaatataaaacgatgtaaagacaagttggttatttgtggtaaatttagagaagtaggaaataaattttgatgagaataatagtcaatt |
25216303 |
T |
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| Q |
418 |
ttgagtttaagagtggttaatgtgtgacatgaaaagaaggaaggggaaaatt |
469 |
Q |
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| T |
25216302 |
ttgagtttaagagtggttaatgtgtgacatgaaaagaaggaaggggaaaatt |
25216251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Complemental strand, 25280857 - 25280403
Alignment:
| Q |
18 |
aggagactctatgtaagttacccacatttctacattaagatttacatgttcgatagaagagagatttatattgctctcacaaagtttctgtaaaggacca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
25280857 |
aggagactctatgtaagttacccacatttctacattaagatttacatgttcgatagaagagagatttatattgctctcacaaagtttctgtaaaggatca |
25280758 |
T |
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| Q |
118 |
tacccgtgataaacaaaggtacagagatttggagtggataactgaaatttcatctcagacatggaaaagccagattgtattcttaaattggctagtgtgg |
217 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25280757 |
tacccgcgataaacaaaggtacagagatttggagtggataactgaaatttcatctcagacatggaaaagccagattgtattcttaaattggctagtgtgg |
25280658 |
T |
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| Q |
218 |
cattcactatgcagaggtttaaataatcacgaactatacaaccggtaatgaccaaagtatttaatttgtttaacgttgaaaagggattgacacgaccatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25280657 |
cattcactatgcagaggtttaaataatcacgaactatacaaccggtaatgaccaaagtatttaatttgtttaacgttgaaaagggattgacacgaccatc |
25280558 |
T |
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| Q |
318 |
atcgccgacacaaaatataaaacgatgtaaagacaagttggttatttgtggtaaatttagagaagtaggaaataaattttgatgagaat---aatagtca |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25280557 |
atcgccgacacaaaatataaaacgatgtaaagacaagttggttatttgtggtaaatttagagaagtaggaaataaattttgatgagaataataatagtca |
25280458 |
T |
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| Q |
415 |
attttgagtttaagagtggttaatgtgtgacatgaaaagaaggaaggggaaaatt |
469 |
Q |
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| T |
25280457 |
attttgagtttaagagtggttaatgtgtgacatgaaaagaaggaaggggaaaatt |
25280403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 126 - 469
Target Start/End: Complemental strand, 25064904 - 25064561
Alignment:
| Q |
126 |
ataaacaaaggtacagagatttggagtggataactgaaatttcatctcagacatggaaaagccagattgtattcttaaattggctagtgtggcattcact |
225 |
Q |
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||||||||||||||| ||| |||| ||||||||||||||||||| ||||||| | |||||||||| || |||| ||||| |||| ||||||||| | | |
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| T |
25064904 |
ataaacaaaggtacaaagacttggcgtggataactgaaatttcaactcagacttagaaaagccagtttctattgttaaactggcgagtgtggcacacgat |
25064805 |
T |
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| Q |
226 |
atgcagaggtttaaataatcacgaactatacaaccggtaatgaccaaagtatttaatttgtttaacgttgaaaagggattgacacgaccatcatcgccga |
325 |
Q |
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| T |
25064804 |
atgcagaggtttcgatttttacgaacaatacaaccggtaatgaccaaactatttaatttgtttaatgtcaaaaagggattgactagaccatcattgccaa |
25064705 |
T |
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| Q |
326 |
cacaaaatataaaacgatgtaaagacaagttggttatttgtggtaaatttagagaagtaggaaataaattttgatgagaataatagtcaattttgagttt |
425 |
Q |
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||| || | ||| | || || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| ||||||| |
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| T |
25064704 |
caccgaagagaaagccatttagagacaagttggttatttgtggtaaatttggagaagtaggaaataaattttgatgagagtaatggtcaattgtgagttt |
25064605 |
T |
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| Q |
426 |
aagagtggttaatgtgtgacatgaaaagaaggaaggggaaaatt |
469 |
Q |
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| T |
25064604 |
aagagtggttaatgtgtgacatgaaaagaaggaagggggaaatt |
25064561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 25069993 - 25069933
Alignment:
| Q |
33 |
agttacccacatttctacattaagatttacatgttcgatagaagagagatttatattgctc |
93 |
Q |
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||||| ||||| | |||||| |||||||||||| |||||| |||||||||| |||||||| |
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| T |
25069993 |
agttaaccacactcctacatcaagatttacatgatcgatacaagagagattgctattgctc |
25069933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 25127968 - 25127908
Alignment:
| Q |
33 |
agttacccacatttctacattaagatttacatgttcgatagaagagagatttatattgctc |
93 |
Q |
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| T |
25127968 |
agttaaccacactcctacatcaagatttacatgatcgatacaagagagattgctattgctc |
25127908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 48 - 396
Target Start/End: Original strand, 7058165 - 7058513
Alignment:
| Q |
48 |
tacattaagatttacatgttcgatagaagagagatttatattgctctcacaaagtttctgtaaaggaccatacccgtgataaacaaaggtacagagattt |
147 |
Q |
| |
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||||| |||||||||||||| ||| ||||||||||| |||||||| | ||||| || ||| | ||| ||| ||||| |||||||||| ||| || |
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| T |
7058165 |
tacatcaagatttacatgtttgattgaagagagattgctattgctcgtgaagagtttttgaaaaccaacatgcccccgataagcaaaggtacaaagactt |
7058264 |
T |
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| Q |
148 |
ggagtggataactgaaatttcatctcagacatggaaaagccagattgtattcttaaattggctagtgtggcattcactatgcagaggtttaaataatcac |
247 |
Q |
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||||| |||||||||||||| ||| ||| ||||| || | || | |||||||||| ||||||||| || |||| |||||||| | ||||| |
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| T |
7058265 |
ggagtcgataactgaaatttgatcctagatgaagaaaaatcatttattaattttaaattggcaagtgtggcactcgatatgtagaggttttgtttatcac |
7058364 |
T |
|
| Q |
248 |
gaactatacaaccggtaatgaccaaagtatttaatttgtttaacgttgaaaagggattgacacgaccatcatcgccgacacaaaatataaaacgatgtaa |
347 |
Q |
| |
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||||| ||| | | |||||| |||| |||| || |||||||| || |||||||||||| ||||||||||||||||||||||||| | ||| | |||| |
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| T |
7058365 |
gaactgcacatctgttaatgatcaaactattcaacttgtttaatgtcgaaaagggattggcacgaccatcatcgccgacacaaaagagaaagccttgtag |
7058464 |
T |
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| Q |
348 |
agacaagttggttatttgtggtaaatttagagaagtaggaaataaattt |
396 |
Q |
| |
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||||| |||||||| | |||||||| |||||| ||||||||||||| |
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| T |
7058465 |
agacaggttggttaatgctggtaaatccagagaatcaggaaataaattt |
7058513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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