View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_high_2 (Length: 716)
Name: NF11599_high_2
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 665; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 1 - 700
Target Start/End: Original strand, 45307240 - 45307932
Alignment:
| Q |
1 |
gagtgcagaaaacaagaagttgacaggaatgttgacagagatgtgtgagaattacaacacattgagaaacaatttgatggaatatatgagaaagaatcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45307240 |
gagtgcagaaaacaagaagttgacaggaatgttgacagagatgtgtgagaattacaacacattgagaaacaatttgatggaatatatgagaaagaatcct |
45307339 |
T |
|
| Q |
101 |
gatcataaggagaaaagaaaatctgatgaaataagcagcagtaacaatctaatgggaggaggaggagttactggaaacaactctgagagcagttcaagtg |
200 |
Q |
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| T |
45307340 |
gatcataaggagaaaagaaaatctgatgaaataagcagcagtaacaatctaatgggaggaggag---ttactggaaacaactctgagagcagttcaagtg |
45307436 |
T |
|
| Q |
201 |
atgaagatcaatcatgcaagaaaccaaggcaaatagtagaaacttgcattaaggctaaagtttcaagagtttatttcaagacagaatcatctgattcaag |
300 |
Q |
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| T |
45307437 |
atgaagatcaatcatgcaagaaaccaaggcaaatagtagaaacttgcattaaggctaaagtttcaagagtttatttcaagacagaatcatctgattcaag |
45307536 |
T |
|
| Q |
301 |
ccttgtaagaatattcattcctcttcattaatttgcaaagccaacaatatatataagtgatttttgtttgacattttttgtgttaattaattttcagatt |
400 |
Q |
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| T |
45307537 |
ccttgtaagaatattcattcctcttcattaatttgcaaagccaacaatat----aagtgatttttgtttgacattttttgtgttaattaattttcagatt |
45307632 |
T |
|
| Q |
401 |
gtgaaagatggatatcagtggagaaaatatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgctccaagctgca |
500 |
Q |
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| T |
45307633 |
gtgaaagatggatatcagtggagaaaatatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgctccaagctgca |
45307732 |
T |
|
| Q |
501 |
cagtgaagaagaaagtgcaaagaagtgttgatgatccatcagttgtggttgcaacatatgaaggagagcataaccatcctcatccttcgcaaacggagcc |
600 |
Q |
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| T |
45307733 |
cagtgaagaagaaagtgcaaagaagtgttgatgatccatcagttgtggttgcaacatatgaaggagagcataaccatcctcatccttcgcaaaccgagcc |
45307832 |
T |
|
| Q |
601 |
aacaaacaatcgttgtaggaaccaaattagtccagtagcaccttcttcttctgcaccaagtacagttacacttgattggacaaagaaagcaccttcttct |
700 |
Q |
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| T |
45307833 |
aacaaacaatcgttgtaggaaccaaattagtccagtagcaccttcttcttctgcaccaagtacagttacacttgattggacaaagaaagcaccttcttct |
45307932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 45311097 - 45311143
Alignment:
| Q |
161 |
ggaggagttactggaaacaactctgagagcagttcaagtgatgaaga |
207 |
Q |
| |
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| T |
45311097 |
ggaggagttaatggaaacaactctgagagtagttcaaatgatgaaga |
45311143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 391 - 499
Target Start/End: Original strand, 928311 - 928419
Alignment:
| Q |
391 |
ttttcagattgtgaaagatggatatcagtggagaaaatatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgct |
490 |
Q |
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||||||||||||||| |||||||| || ||||| |||||||||||||| ||||| || ||||| || | ||||||||| || ||||||||||| |||||| |
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| T |
928311 |
ttttcagattgtgaaggatggataccattggaggaaatatggacaaaaagtgaccagagataacccttgtccaagagcttatttcaaatgctcttttgct |
928410 |
T |
|
| Q |
491 |
ccaagctgc |
499 |
Q |
| |
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||||||||| |
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| T |
928411 |
ccaagctgc |
928419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 89
Target Start/End: Original strand, 927848 - 927893
Alignment:
| Q |
44 |
tgtgagaattacaacacattgagaaacaatttgatggaatatatga |
89 |
Q |
| |
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| T |
927848 |
tgtgagaattacaacactttgagaagtcatttgatggaatatatga |
927893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 400 - 513
Target Start/End: Complemental strand, 48925973 - 48925860
Alignment:
| Q |
400 |
tgtgaaagatggatatcagtggagaaaatatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgctccaagctgc |
499 |
Q |
| |
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|||||| |||||||||||||||||||||||||| || || || || || ||||| || ||||| || || |||||||| || || |||||||| ||||| |
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| T |
48925973 |
tgtgaaggatggatatcagtggagaaaatatggtcagaaagtcactagagataacccctctcctagggcttacttcaagtgttcctttgctcctggctgc |
48925874 |
T |
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| Q |
500 |
acagtgaagaagaa |
513 |
Q |
| |
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| T |
48925873 |
cctgtgaagaagaa |
48925860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 407 - 513
Target Start/End: Complemental strand, 3259078 - 3258972
Alignment:
| Q |
407 |
gatggatatcagtggagaaaatatggacaaaaggtgacaagggataatccatctccaagagcatacttcaaatgctcatttgctccaagctgcacagtga |
506 |
Q |
| |
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||||||||||| ||||| |||||||| || ||||| || || ||||| || ||||| ||||| || || | ||||||| ||||||||||||| |||| | |
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| T |
3259078 |
gatggatatcaatggaggaaatatggtcagaaggttactagagataacccctctcctagagcttattttaggtgctcatatgctccaagctgcccagtta |
3258979 |
T |
|
| Q |
507 |
agaagaa |
513 |
Q |
| |
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| ||||| |
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| T |
3258978 |
aaaagaa |
3258972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 16797713 - 16797667
Alignment:
| Q |
161 |
ggaggagttactggaaacaactctgagagcagttcaagtgatgaaga |
207 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||||| |||||||| |
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| T |
16797713 |
ggaggagttaatggaaacaactctgagagtagttcaaacgatgaaga |
16797667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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