View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11599_high_21 (Length: 387)
Name: NF11599_high_21
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_21 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 28 - 387
Target Start/End: Original strand, 26022987 - 26023344
Alignment:
| Q |
28 |
gaagcagtataattgttacaaaaatggatcatcaatatttctctcgacaaatttcgcctaataaacctttgagccactatttaaatattattagagtcaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26022987 |
gaagcagtataattgttacaaaaatggatca---atatttctcttgacaaatttcgcctaataaacctttgagccactatttaaatactattagagtcaa |
26023083 |
T |
|
| Q |
128 |
atttcatgtacctgaccttgatcaaaatcaatgagatttgagagcaacactaaaatgctcgtaactttctcatctaaaatcttaatttgattatgtttgt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26023084 |
atttcatgtacctgaccttgatcaaaatcaatgagatttgagagcaacactaaaatgctcgtaactttctcatctaaaatcttaatttgattatgtttgt |
26023183 |
T |
|
| Q |
228 |
tgttgaacgaccgtagacacaagaactataattttgcttccttttcgttgtttagaatttagttggtaagatatgaaaacgtga-ttctcctctatttct |
326 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
26023184 |
tgttgaacgaccgtagacacgagaactataattttgcatccttttcgttgtttagattttagttggtaagatatgaaaacgtgatttctcctctttttct |
26023283 |
T |
|
| Q |
327 |
aactctttcttataaaccttactctaaccattgttattattccttattcattgtttgaggt |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26023284 |
aactctttcttataaaccttactctaaccattgttattattccttattcattgtttgaggt |
26023344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 49287829 - 49287774
Alignment:
| Q |
146 |
tgatcaaaatcaatgagatttgagagcaacactaaaatgctcgtaactttctcatc |
201 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||| || ||||||||||||| |
|
|
| T |
49287829 |
tgatcaaaatcggtgagatttgtgagcagcactaaaatgttcataactttctcatc |
49287774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University