View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_high_23 (Length: 370)
Name: NF11599_high_23
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 36274148 - 36273794
Alignment:
| Q |
1 |
attggatagcactatatttcaatgtttgatttctgataggtggtggaaggagaccaagtgctctccagaggtatgttacctcaaaactatcaaatacatg |
100 |
Q |
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| T |
36274148 |
attggatagcactatatttcaatgtttgatttctgataggtggtggaaggagaccaagtgctctccagaggtatgttacctcaaaactatcaaatacacg |
36274049 |
T |
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| Q |
101 |
atcatttggataaagggagaacaaggcaaaacagtccttcaaatagtatggcatttgagtacagcttaactcaagtgcaggtaaaatgaaacttctgtct |
200 |
Q |
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| T |
36274048 |
atcatttggataaagggagaacaaggcaaaacagtccttcaaatagtatggcatttgagtacaacttaactcaagtgcaggtaaaatgaaacctctgtct |
36273949 |
T |
|
| Q |
201 |
tgtgtattccaaatttcattgtctcttatgtacttccactcatatgtctcatattttgaaaatagtaaactgcctaatgttctcaataccaaaggaattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36273948 |
tgtgtattccaaatttcattgtctcttatgtacttccactcatatgtctcatattttgaaaatagtaaactgcctaatgttctcaataccaaaggaattc |
36273849 |
T |
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| Q |
301 |
ctctacattttttcactatttctctcccaatatccaccaaatgtggatacttttt |
355 |
Q |
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| T |
36273848 |
ctcttcattttttcactatttctctcccaatatccaccaaatgtggatacttttt |
36273794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 40221685 - 40221587
Alignment:
| Q |
9 |
gcactatatttcaatgtttgattt------ctgataggtggtggaaggagaccaagtgctctccagaggtatgttacctcaaaactatcaaatacatga |
101 |
Q |
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|||||||||||||||||||||||| ||| | |||| ||||| |||| ||||||||||||| || ||||||| | ||||||||||||||||||| |
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| T |
40221685 |
gcactatatttcaatgtttgattttggtttctgtttggtgctggaatgagagcaagtgctctccacagcgatgttacatgaaaactatcaaatacatga |
40221587 |
T |
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