View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_high_25 (Length: 360)
Name: NF11599_high_25
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 23922428 - 23922764
Alignment:
| Q |
1 |
attttaaatgaaagtctaatgttaaaaccttagtgatcaaacatttgaagaaaccaagttgccaatactaacaataaataacaattccaacatactacta |
100 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23922428 |
attttaaaagaaaatctaatgttaaaaccttagtgatcaaacatttaaagaaaccaagttgccaatactaacaataaataacaattccaacatactacta |
23922527 |
T |
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| Q |
101 |
taataacctttcattaattgacctaaaaattaaaatgaattattttcatattatcacttacttgtaaagaaaactatgatcatggagtccaacaacaagc |
200 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23922528 |
taataaactttcattaattgacctgaaaattaaaatgaattattttcatattagcacttacttgtaaagaaaactatgatcatggagtccaacaacaagc |
23922627 |
T |
|
| Q |
201 |
atagaagcaccaatttctctcacagtagctgcaatctttgttccttcattctccccttctgtcacaataatctcaacctttgtctgcaacacaatcctaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23922628 |
atagaagcaccaatttctctcacagtagctgcaatctttgttccttcattctccccttctgtcacaataatctcaacctttgtctgcaacacaatcctaa |
23922727 |
T |
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| Q |
301 |
gnnnnnnnatatgacacatatcaattaatttgaacat |
337 |
Q |
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| ||||||||||||||||||||||||||||| |
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| T |
23922728 |
gtttttttatatgacacatatcaattaatttgaacat |
23922764 |
T |
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