View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_high_29 (Length: 338)
Name: NF11599_high_29
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 28102819 - 28102945
Alignment:
| Q |
21 |
caaaccatttttgataaaggtgtttatttgatcaatttagttagcgaaatgctaataaatgttttaaaaacacttgttaagaaacttaaaaaagaaagtt |
120 |
Q |
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| T |
28102819 |
caaaccatttttgataaaggtgtttattttgtcaatttagttagcgaaatgctaataaatgttctaaaaacacttgttaagaaacttaaaaaagaaaatt |
28102918 |
T |
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| Q |
121 |
tatcttattaatgatgcattcaacacc |
147 |
Q |
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| T |
28102919 |
tatcttattaatgatgcattcaacacc |
28102945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 215 - 324
Target Start/End: Original strand, 28103013 - 28103121
Alignment:
| Q |
215 |
ctagtgtcataagaacacttcttagtgtaactcattaagttaatacattgatttctacatctatgactgcgccacatcaccaataaaaaatatgtcatct |
314 |
Q |
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| T |
28103013 |
ctagtgtcatgacaacacttcttggtgcaactcattaagttaatagattgatttctacatctatgactgcgccacatcaccaat-aaaaatatgtcatct |
28103111 |
T |
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| Q |
315 |
cttcttcccc |
324 |
Q |
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| T |
28103112 |
cttcttcccc |
28103121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 9596294 - 9596350
Alignment:
| Q |
91 |
cacttgttaagaaacttaaaaaagaaagtttatcttattaatgatgcattcaacacc |
147 |
Q |
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| T |
9596294 |
cacttgttaagaagcttaaaaaagaaagtttatcttagagatgatgtattcaacacc |
9596350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 29110866 - 29110825
Alignment:
| Q |
75 |
ataaatgttttaaaaacacttgttaagaaacttaaaaaagaa |
116 |
Q |
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| T |
29110866 |
ataaatgctttaaaaacacttgttaagaaatttaaaaaagaa |
29110825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 24093783 - 24093839
Alignment:
| Q |
91 |
cacttgttaagaaacttaaaaaagaaagtttatcttattaatgatgcattcaacacc |
147 |
Q |
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| T |
24093783 |
cacttgttaagaagcttaaaagagaaagtttatcttgggaatgatgtattcaacacc |
24093839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 6963715 - 6963682
Alignment:
| Q |
94 |
ttgttaagaaacttaaaaaagaaagtttatctta |
127 |
Q |
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| T |
6963715 |
ttgttaagaaacttaaaagagaaagtttatctta |
6963682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 12928972 - 12929032
Alignment:
| Q |
67 |
aaatgctaataaatgttttaaaaacacttgttaagaaacttaaaaaagaaagtttatctta |
127 |
Q |
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|||||||||||| |||| | ||||||||||||||||| || ||| | ||||||||||||| |
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| T |
12928972 |
aaatgctaataagtgttcttaaaacacttgttaagaagctagaaagataaagtttatctta |
12929032 |
T |
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