View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_high_30 (Length: 336)
Name: NF11599_high_30
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 3 - 326
Target Start/End: Original strand, 44720834 - 44721157
Alignment:
| Q |
3 |
ataataataaataagaagtgtactttgtgcaaatggttcgtacaagttagttgaagagaaaataaaatctcacccgtccaatagcctcccacaaagaagc |
102 |
Q |
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| T |
44720834 |
ataataataaataagaagtgtactttgtgcaaatggttcgtacaagttagttgaagagaaaataaaatctcacccgtccaatagcctcccacaaagaagc |
44720933 |
T |
|
| Q |
103 |
attaaaagaagcagcggttgtgataacttgaggaaaactagtagcaccagggaacacaccaccaaatctagtacctggacccacatttgaaacaccatga |
202 |
Q |
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| T |
44720934 |
attaaaagaagcagcggttgtgataacttgaggaaaactagtagcagcagggaacacaccaccaaatctagtacctggacccacatttgaaacaccatga |
44721033 |
T |
|
| Q |
203 |
agtgcctccgaccaccactcatagcttttcattccgactctaggaaccgccggagcattattcactaacagattaaccttctcttgcattgttaatcttc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44721034 |
agtgcctccgaccaccactcatagcttttcattccgactctaggaaccgccggagcattattcactaacagattaaccttctcttgcattgttaatcttc |
44721133 |
T |
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| Q |
303 |
caatgagatccttcactctctctg |
326 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
44721134 |
caatgagatccttcactctctctg |
44721157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 74 - 318
Target Start/End: Complemental strand, 39088445 - 39088201
Alignment:
| Q |
74 |
acccgtccaatagcctcccacaaagaagcattaaaagaagcagcggttgtgataacttgaggaaaactagtagcaccagggaacacaccaccaaatctag |
173 |
Q |
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| T |
39088445 |
acccgtccaattgcttcccacaaggaagcattgaatgaagcaacggtagtgatgacttgagggaagctagtggcagctgggaattggccagcaaacttag |
39088346 |
T |
|
| Q |
174 |
tacctggacccacatttgaaacaccatgaagtgcctccgaccaccactcatagcttttcattccgactctaggaaccgccggagcattattcactaacag |
273 |
Q |
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| T |
39088345 |
ttcctggtcccacatttgaaactccatgaagagcctctgaccaccactcatagcctttgatcccaacccttggaaccgcggcagcattgttcaccaacat |
39088246 |
T |
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| Q |
274 |
attaaccttctcttgcattgttaatcttccaatgagatccttcac |
318 |
Q |
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||||||| ||||||| ||| |||||||||||||| || ||||| |
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| T |
39088245 |
gctaaccttttcttgcaatgtcaatcttccaatgaggtcattcac |
39088201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 107 - 225
Target Start/End: Complemental strand, 13298052 - 13297934
Alignment:
| Q |
107 |
aaagaagcagcggttgtgataacttgaggaaaactagtagcaccagggaacacaccaccaaatctagtacctggacccacatttgaaacaccatgaagtg |
206 |
Q |
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|||||||||||||| |||||||||||||| || ||||| || | | ||| | ||||||||| |||||||||| |||||||| ||||||||||| | | |
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| T |
13298052 |
aaagaagcagcggtggtgataacttgagggaagctagtggcggcggagaaggccccaccaaatttagtacctgggcccacattagaaacaccatgtaaag |
13297953 |
T |
|
| Q |
207 |
cctccgaccaccactcata |
225 |
Q |
| |
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| ||||||||||||||||| |
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| T |
13297952 |
cttccgaccaccactcata |
13297934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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