View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_high_34 (Length: 311)
Name: NF11599_high_34
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 4109945 - 4109823
Alignment:
| Q |
100 |
caacaaaaataataagttgaaaagtcgatttagctcaactgacaataatgatattgttccttattaaaccgaatatttcatcagactctaactcaaaacg |
199 |
Q |
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| T |
4109945 |
caacaaaaataataagttgaa--gtcgatttagctcaactgacaataatgatattgtttcttattaaaccgaatatttcttcagactctaactcgaaacg |
4109848 |
T |
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| Q |
200 |
tcgaagttgtgtgtgttttatcgac |
224 |
Q |
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| T |
4109847 |
tcgaagttgtgtgtgttttatcgac |
4109823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 4110048 - 4109996
Alignment:
| Q |
19 |
aatcatcattcacacacacccaaatcacactctctagtctactatgctatgcc |
71 |
Q |
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| T |
4110048 |
aatcatcattcacacgcacccaaatcacactctctagtctactatgctatgcc |
4109996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 4109780 - 4109742
Alignment:
| Q |
267 |
ctgaggttgaaattgagattaatttccatttcatctcac |
305 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
4109780 |
ctgaggttgaaattgagattaatttccatttcatttcac |
4109742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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