View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11599_high_36 (Length: 295)
Name: NF11599_high_36
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 2671625 - 2671890
Alignment:
| Q |
18 |
gtaacgtggaaccaaaaaggtaccaagtagtctatttagttactcaactagtctaggactcttggtgccatcatttgtagaggttataagttcaagagac |
117 |
Q |
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| T |
2671625 |
gtaacgtggaaccaaaaaggtaccaagtagtctatttaattactcaactagtctaggactcttggtgccatcatttgtagaggttataagttcaagagac |
2671724 |
T |
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| Q |
118 |
aaatgtcaaaataaccgcataaaagttttgtttgacaaaaaatagtagataattgataagctagtttataacagatgaacttattttaaaatttaagaag |
217 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
2671725 |
aaatgtcaaaataaccgcataaaagccttgtttgacaaaaaatagtagataactgataaactagtttataacggatgaacttattttaaaatttaagaag |
2671824 |
T |
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| Q |
218 |
agtgccactcctcattcaactcttccatcaactcctccttcaattcgtccgtcaactcttccttca |
283 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||| ||||||| |
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| T |
2671825 |
agtgccactcctcgttcaactcttccatcaactcctccttcaattcatccttcaactcctccttca |
2671890 |
T |
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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 2671855 - 2671915
Alignment:
| Q |
224 |
actcctcattcaactcttccatcaactcctccttcaattcgtccgtcaactcttccttcat |
284 |
Q |
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||||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2671855 |
actcctccttcaattcatccttcaactcctccttcaattcgtccgtcaactcttccttcat |
2671915 |
T |
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