View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11599_high_37 (Length: 293)
Name: NF11599_high_37
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_37 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 23179406 - 23179140
Alignment:
| Q |
16 |
caaacaatttatgtacttgataaccaatacttattgaatatgggtttatcttatatttagacttgcaacttacttctgaagagatacaaaatttatcttt |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23179406 |
caaacaatttatgtacttcataaccaatacttattgaataagggtttatcttatatttagacttgcaacttacttctgaagagatacaaagtttatcttt |
23179307 |
T |
|
| Q |
116 |
gctcgagattgagaaacatctgcaaacaaacagaagaagtttgaaggaatatccatcaatgccatatccaaaaggatatgttgcaagtcaattagggaat |
215 |
Q |
| |
|
||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23179306 |
gcttgagattgagaaacatttgcaaacaaatagaagaagtttgaaggaatatccatcaatgccatatccaaaaggatatgttgcaagtcaattagggaat |
23179207 |
T |
|
| Q |
216 |
agactaatatatgaagaatgtggttatgatcaatctattcaacaacaacaattccaacaattattca |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23179206 |
agactaatatatgaagaatgtggttatgatcaatctattcaacaacaacaattccaacaattattca |
23179140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University