View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11599_high_40 (Length: 290)

Name: NF11599_high_40
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11599_high_40
NF11599_high_40
[»] scaffold0189 (1 HSPs)
scaffold0189 (102-276)||(13709-13886)
[»] chr8 (8 HSPs)
chr8 (55-101)||(14233557-14233603)
chr8 (54-101)||(42651031-42651078)
chr8 (55-90)||(5742581-5742616)
chr8 (55-90)||(28156315-28156350)
chr8 (54-101)||(38939105-38939152)
chr8 (55-101)||(45405748-45405794)
chr8 (57-97)||(3394619-3394659)
chr8 (57-101)||(34578250-34578294)
[»] chr4 (5 HSPs)
chr4 (55-97)||(54801404-54801446)
chr4 (54-101)||(4949147-4949194)
chr4 (55-101)||(9827898-9827944)
chr4 (55-98)||(32574389-32574432)
chr4 (55-101)||(1987626-1987672)
[»] chr3 (10 HSPs)
chr3 (55-101)||(29533873-29533919)
chr3 (54-101)||(9557845-9557892)
chr3 (55-101)||(50025598-50025644)
chr3 (54-90)||(38471753-38471789)
chr3 (55-90)||(2280289-2280324)
chr3 (54-101)||(33971994-33972041)
chr3 (55-94)||(49361757-49361796)
chr3 (55-101)||(16295576-16295622)
chr3 (57-91)||(34208381-34208415)
chr3 (54-95)||(36301127-36301168)
[»] chr2 (10 HSPs)
chr2 (55-101)||(34373120-34373166)
chr2 (54-101)||(40721882-40721929)
chr2 (54-101)||(43026047-43026094)
chr2 (55-101)||(9377671-9377717)
chr2 (55-101)||(13850097-13850143)
chr2 (65-101)||(33569690-33569726)
chr2 (55-101)||(23141466-23141512)
chr2 (55-101)||(23553256-23553302)
chr2 (55-101)||(27329022-27329068)
chr2 (55-101)||(30340106-30340152)
[»] chr7 (6 HSPs)
chr7 (54-90)||(384662-384698)
chr7 (54-94)||(47379671-47379711)
chr7 (55-101)||(640504-640550)
chr7 (55-101)||(2600447-2600493)
chr7 (55-101)||(37970045-37970091)
chr7 (57-101)||(41458813-41458857)
[»] chr1 (9 HSPs)
chr1 (54-101)||(6396438-6396485)
chr1 (58-101)||(27787604-27787647)
chr1 (54-101)||(43757697-43757744)
chr1 (54-93)||(51436352-51436391)
chr1 (55-101)||(46903582-46903628)
chr1 (54-91)||(37741875-37741912)
chr1 (54-101)||(21446131-21446178)
chr1 (55-90)||(31666130-31666165)
chr1 (55-101)||(8577415-8577461)
[»] chr5 (6 HSPs)
chr5 (55-101)||(3518295-3518341)
chr5 (55-101)||(5005225-5005271)
chr5 (56-101)||(35358848-35358893)
chr5 (55-90)||(10469871-10469906)
chr5 (55-101)||(8761759-8761805)
chr5 (55-101)||(12612930-12612976)
[»] scaffold0592 (1 HSPs)
scaffold0592 (55-101)||(1022-1068)
[»] chr6 (1 HSPs)
chr6 (55-101)||(34976728-34976774)


Alignment Details
Target: scaffold0189 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 102 - 276
Target Start/End: Original strand, 13709 - 13886
Alignment:
Q  102 tgagaaattcttgtgtaaaataatgaaaaggtctgtttgtttgaaaagttacttttataagactatcccaattcccactcagttcacatctttttcacaa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13709 tgagaaattcttgtgtaaaataatgaaaaggtctgtttgtttgaaaagttacttttataagactatcccaattcccactcagttcacatctttttcacaa 13808  T
Q  202 tattgagagtgcatgcataa---tacagttctttatctctattcttcgttagtattaacaaatccgttttcaagtttc 276  Q
    ||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  13809 tattgagagtgcatgcataatactacagttctttatctctgttcttcgttagtattaacaaatccattttcaagtttc 13886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 14233603 - 14233557
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||    
T  14233603 accaatgagaagagagaacaacaaagttgtcacaaaagttataccaa 14233557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 42651031 - 42651078
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    ||||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  42651031 aaccaatgagaagagagaacaacaaggttgtctcaaaagttgtaccaa 42651078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 5742616 - 5742581
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaa 90  Q
    |||||||||||||||||| |||||||||||||||||    
T  5742616 accaatgagaagagagaacaacaaagttgtctcaaa 5742581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 28156315 - 28156350
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaa 90  Q
    |||||||||||||||||| |||||||||||||||||    
T  28156315 accaatgagaagagagaacaacaaagttgtctcaaa 28156350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 38939152 - 38939105
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    ||||||||||||||||||| ||||||||| |||||||| || ||||||    
T  38939152 aaccaatgagaagagagaacaacaaagttatctcaaaaattgtaccaa 38939105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 45405794 - 45405748
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| || |||||||||||||| ||| ||||||    
T  45405794 accaatgagaagagagaacaataaagttgtctcaaaggttgtaccaa 45405748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 3394659 - 3394619
Alignment:
Q  57 caatgagaagagagaataacaaagttgtctcaaaagttata 97  Q
    |||||||||||||||| || ||||||||| |||||||||||    
T  3394659 caatgagaagagagaacaataaagttgtcccaaaagttata 3394619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 34578294 - 34578250
Alignment:
Q  57 caatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||| ||||||||||| |||||||||||| ||||| |||||||||    
T  34578294 caataagaagagagaacaacaaagttgtcccaaaaattataccaa 34578250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 54801446 - 54801404
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttata 97  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  54801446 accaatgagaagagagaataacaaagttgtctcaaaaattata 54801404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 4949194 - 4949147
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  4949194 aaccaatgagaagaaagaacaacaaagttgtctcaaaagttgtaccaa 4949147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 9827944 - 9827898
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||||    
T  9827944 accaatgagaagagataacaacaaagttgtctcaaaggttataccaa 9827898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 32574389 - 32574432
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttatac 98  Q
    ||||||||||||||| |||| ||||||||||| |||||||||||    
T  32574389 accaatgagaagagataataccaaagttgtcttaaaagttatac 32574432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 1987672 - 1987626
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||| ||||||||| ||||||||||||||||| ||| ||||||    
T  1987672 accaatgaaaagagagaacaacaaagttgtctcaaaggttgtaccaa 1987626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 29533873 - 29533919
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||    
T  29533873 accaatgagaagagagaacaacaaagttgtctcaaaagttgtaccaa 29533919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 9557892 - 9557845
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    ||||||||||||||||||| |||||| |||||||||||||| ||||||    
T  9557892 aaccaatgagaagagagaacaacaaaattgtctcaaaagttgtaccaa 9557845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 50025644 - 50025598
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  50025644 accaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaa 50025598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 38471753 - 38471789
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaa 90  Q
    ||||||||||||||||||| |||||||||||||||||    
T  38471753 aaccaatgagaagagagaacaacaaagttgtctcaaa 38471789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 2280289 - 2280324
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaa 90  Q
    |||||||||||||||||| |||||||||||||||||    
T  2280289 accaatgagaagagagaacaacaaagttgtctcaaa 2280324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 33971994 - 33972041
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    ||||||||||||||||||| ||||| |||||||||||| || ||||||    
T  33971994 aaccaatgagaagagagaacaacaaggttgtctcaaaaattgtaccaa 33972041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 49361796 - 49361757
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagtt 94  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  49361796 accaatgagaagaaagaataacaaagttgtcacaaaagtt 49361757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 16295576 - 16295622
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||| | ||||||||| ||||||||||||||||||||| ||||||    
T  16295576 accaataaaaagagagaacaacaaagttgtctcaaaagttgtaccaa 16295622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 91
Target Start/End: Original strand, 34208381 - 34208415
Alignment:
Q  57 caatgagaagagagaataacaaagttgtctcaaaa 91  Q
    |||||||||||||||| ||||||||||||||||||    
T  34208381 caatgagaagagagaaaaacaaagttgtctcaaaa 34208415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 36301168 - 36301127
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaaagtta 95  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||    
T  36301168 aaccaatgagaagagagaacaacaaagttatctcaaatgtta 36301127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 34373120 - 34373166
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||    
T  34373120 accaatgagaagagagaacaacaaagttgtctcaaaggttataccaa 34373166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 40721882 - 40721929
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    ||||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  40721882 aaccaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaa 40721929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 43026047 - 43026094
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    ||||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  43026047 aaccaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaa 43026094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 9377717 - 9377671
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  9377717 accaataagaagagagaacaacaaagttgtctcaaaggttataccaa 9377671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 13850143 - 13850097
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||| ||||||||| |||||| |||||||||||||||||||||    
T  13850143 accaatgaaaagagagaacaacaaaattgtctcaaaagttataccaa 13850097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 33569690 - 33569726
Alignment:
Q  65 agagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||||||||||||||| ||||||    
T  33569690 agagagaataacaaagttgtctcaaaagttgtaccaa 33569726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 23141466 - 23141512
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| ||||| |||||| |||||||| ||||||    
T  23141466 accaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaa 23141512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 23553256 - 23553302
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| ||||| |||||| |||||||| ||||||    
T  23553256 accaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaa 23553302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 27329068 - 27329022
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    ||||||||||| |||||| ||||||||||||||||||| | ||||||    
T  27329068 accaatgagaaaagagaacaacaaagttgtctcaaaagatgtaccaa 27329022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 30340106 - 30340152
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| ||||| |||||| |||||||| ||||||    
T  30340106 accaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaa 30340152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 384662 - 384698
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaa 90  Q
    |||||||||||||||||||||||||||||||||||||    
T  384662 aaccaatgagaagagagaataacaaagttgtctcaaa 384698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 47379671 - 47379711
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaaagtt 94  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  47379671 aaccaatgagaagagagaacaacaaagttgtctcaaaagtt 47379711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 640504 - 640550
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| |||||||||||||||||  |||||||||    
T  640504 accaatgagaagagagaacaacaaagttgtctcaaagattataccaa 640550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 2600493 - 2600447
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  2600493 accaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaa 2600447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 37970045 - 37970091
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  37970045 accaatgagaagagagaacaacaaagttgtctcaaatgttgtaccaa 37970091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 41458857 - 41458813
Alignment:
Q  57 caatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||| || |||||| ||||||||||||||||||||| ||||||    
T  41458857 caatgaaaaaagagaacaacaaagttgtctcaaaagttgtaccaa 41458813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 6396438 - 6396485
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    ||||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  6396438 aaccaatgagaagagagaacaacaaagttgtctcaaatgttgtaccaa 6396485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 27787604 - 27787647
Alignment:
Q  58 aatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||    
T  27787604 aatgagaagagagaacaacaaagttgtctcaaaagttgtaccaa 27787647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 43757697 - 43757744
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    ||||||||| ||||||||| |||||||||||||||||| |||||||||    
T  43757697 aaccaatgaaaagagagaacaacaaagttgtctcaaaaattataccaa 43757744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 93
Target Start/End: Complemental strand, 51436391 - 51436352
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaaagt 93  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  51436391 aaccaatgagaagagagaacaacaaagttgtctcaaaagt 51436352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 46903582 - 46903628
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  46903582 accaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaa 46903628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 37741912 - 37741875
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaaa 91  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  37741912 aaccaatgagaagagagaacaacaaagttgtctcaaaa 37741875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 21446178 - 21446131
Alignment:
Q  54 aaccaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    ||||||||||||||||||  ||||||||||||||||| ||| ||||||    
T  21446178 aaccaatgagaagagagatcaacaaagttgtctcaaaggttgtaccaa 21446131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 31666165 - 31666130
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaa 90  Q
    |||||||||||||||||| |||||||||||||||||    
T  31666165 accaatgagaagagagaacaacaaagttgtctcaaa 31666130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 8577461 - 8577415
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    ||||||||||| |||||| ||||| |||||| |||||||||||||||    
T  8577461 accaatgagaatagagaacaacaaggttgtcccaaaagttataccaa 8577415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 3518295 - 3518341
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  3518295 accaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaa 3518341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 5005225 - 5005271
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||| ||||||||| ||||||||||||||||||||| ||||||    
T  5005225 accaatgataagagagaacaacaaagttgtctcaaaagttgtaccaa 5005271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 35358893 - 35358848
Alignment:
Q  56 ccaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||||    
T  35358893 ccaatgagaagagagaacaacaaagttgtctcaaaggttgtaccaa 35358848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 90
Target Start/End: Complemental strand, 10469906 - 10469871
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaa 90  Q
    |||||||||||||||||| |||||||||||||||||    
T  10469906 accaatgagaagagagaacaacaaagttgtctcaaa 10469871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 8761759 - 8761805
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||| ||||||||| ||||||||||||||||| ||| ||||||    
T  8761759 accaatgaaaagagagaacaacaaagttgtctcaaaggttgtaccaa 8761805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 12612976 - 12612930
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| ||||| |||||| |||||||| ||||||    
T  12612976 accaatgagaagagagaacaacaaggttgtcccaaaagttgtaccaa 12612930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 1022 - 1068
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||| ||||||||| ||||||||| ||||||||||| ||||||    
T  1022 accaatgaaaagagagaacaacaaagttatctcaaaagttgtaccaa 1068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 34976728 - 34976774
Alignment:
Q  55 accaatgagaagagagaataacaaagttgtctcaaaagttataccaa 101  Q
    |||||||||||||||||| ||||||||| ||||||| ||| ||||||    
T  34976728 accaatgagaagagagaacaacaaagttatctcaaaggttgtaccaa 34976774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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