View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11599_high_49 (Length: 252)
Name: NF11599_high_49
Description: NF11599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11599_high_49 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 31525933 - 31526151
Alignment:
| Q |
20 |
tagctgctgtggtttgaggtctggttcacccatcatggaaactgagttgactagtagtagtagaggaaggggttttggtagcatttttggttccactgtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31525933 |
tagctgctgtggtttgaggtctggttcacccatcatggaaactgagttgactagtagtagtagaggaaggggttttggtagcatttttggttccactgtt |
31526032 |
T |
|
| Q |
120 |
aagcctagaccaaccaggtttcaaacttctggtttgtgttctgtttcttttctgatataaatgttgactttgatttgtttcgtttgttagttatatatat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
31526033 |
aagcctagaccaaccaggtttcaaacttctggtttgtgttctgtttcttttctgatataaatgtcgactttgatttgtttcgtttgttagt----tatat |
31526128 |
T |
|
| Q |
220 |
ggttgatttgtcgtttagttcat |
242 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
31526129 |
ggttgattcgtcgtttagttcat |
31526151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University